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NC_019516.2__YP_007006074.1__F417_gp151__00086
Bact-VirNC_019516.2__YP_007006074.1__F417_gp151__00086
Identity
- Accession:
- NC_019516 ↗
- Kingdom:
- phage
Quality
55.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-151_204-215
Domain cluster:
rep: OL597546.1__UUB23297.1__X__00001__D24-147
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10123.15 best | Mu-like_Pro | 38.3 | 1.70e-09 | 83.2% | 23.1% |
D2
medium
residues 472-554
Domain cluster:
rep: JF974315.1__AGN38697.1__RHYG_00028__00028__D233-310
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 35.0 | 3.18e-01 | 100.0% | 33.0% |
| 1e6dM01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.67 | 35.0 | 2.88e-01 | 89.2% | 29.4% |
| 3cwzB01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.63 | 52.0 | 4.29e-01 | 96.4% | 50.7% |
| 6k41R00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.60 | 50.0 | 3.56e-01 | 90.4% | 96.3% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 44.0 | 4.43e-01 | 83.1% | 82.4% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.57 | 44.0 | 3.97e-01 | 86.7% | 99.2% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.56 | 44.0 | 3.62e-01 | 92.8% | 46.2% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 49.0 | 3.67e-01 | 100.0% | 63.8% |
| 3k9tA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 42.0 | 3.09e-01 | 88.0% | 63.7% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 47.0 | 3.93e-01 | 98.8% | 97.9% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 45.0 | 4.08e-01 | 100.0% | 74.1% |
| 3igrA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 38.0 | 3.06e-01 | 84.3% | 82.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5009374 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.68 | 45.0 | 2.76e-01 | 85.5% | 10.7% |
| 3286915 | 620.1.1.1 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF664 | 0.64 | 53.0 | 4.34e-01 | 92.8% | 93.8% |
| 3591456 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.62 | 50.0 | 3.78e-01 | 86.7% | 62.1% |
| 3483040 | 1128.1.1.11 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Microp_apicomplexa_7 | 0.59 | 52.0 | 5.08e-01 | 97.6% | 93.3% |
| 3250261 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.59 | 50.0 | 4.96e-01 | 96.4% | 94.4% |
| 3680927 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.59 | 47.0 | 3.15e-01 | 86.7% | 28.3% |
| 3394510 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.57 | 49.0 | 5.04e-01 | 94.0% | 98.8% |
| 3638639 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.57 | 49.0 | 4.64e-01 | 94.0% | 80.0% |
| 3205958 | 1016.1.1.3 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › PF26434 | 0.56 | 44.0 | 3.27e-01 | 83.1% | 41.2% |
| 3258290 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.55 | 45.0 | 4.70e-01 | 88.0% | 100.0% |
| 3638886 | 1016.1.1.3 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › PF26434 | 0.54 | 44.0 | 3.85e-01 | 88.0% | 73.6% |
| 4527970 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.54 | 43.0 | 3.33e-01 | 88.0% | 75.5% |
| 4253545 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.53 | 44.0 | 4.56e-01 | 92.8% | 100.0% |
| 3409846 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.53 | 42.0 | 2.76e-01 | 89.2% | 18.0% |