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NC_019516.2__YP_007006083.1__F417_gp142__00095

Bact-Vir

NC_019516.2__YP_007006083.1__F417_gp142__00095

Identity

Accession:
NC_019516 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurunvirus› Cyanophage_S-TIM5

TaxID: 1137745

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 196-284
PDB
Domain cluster: rep: BML_09012016_9m_scaffold_2_prodigal-single.1__X__X__00049__D582-664
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.68 49.0 4.09e-01 77.5% 77.2%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 44.0 4.53e-01 78.7% 92.9%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.59 45.0 4.30e-01 82.0% 78.8%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.34e-01 95.5% 72.2%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.58 45.0 4.20e-01 84.3% 71.9%
2n1kA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.33e-01 97.8% 74.5%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.57 40.0 4.04e-01 73.0% 74.2%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.51e-01 96.6% 86.5%
5e1vB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.55 41.0 2.90e-01 77.5% 36.5%
2cx7A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.55 47.0 4.17e-01 94.4% 100.0%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 41.0 3.93e-01 83.1% 100.0%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.54 33.0 3.83e-01 82.0% 87.3%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.54 43.0 3.73e-01 85.4% 67.4%
6mfaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 4.28e-01 95.5% 96.2%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 4.07e-01 95.5% 86.2%
1zxqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.98e-01 98.9% 83.5%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.91e-01 87.6% 79.8%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 37.0 3.50e-01 76.4% 62.2%
8e9gD01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.51 45.0 2.93e-01 97.8% 97.0%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.50 40.0 3.09e-01 87.6% 89.9%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 40.0 3.37e-01 87.6% 92.9%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 38.0 3.30e-01 85.4% 71.4%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4182536 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.69 51.0 4.85e-01 77.5% 94.3%
3333970 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.63 44.0 2.74e-01 71.9% 81.8%
4668791 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.62 56.0 5.30e-01 100.0% 85.7%
3704066 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.62 44.0 2.78e-01 73.0% 86.2%
3192603 2484.1.1.5 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 0.60 41.0 3.03e-01 70.8% 72.6%
4936752 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.70e-01 85.4% 95.5%
1171020 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.60 52.0 5.12e-01 97.8% 97.9%
4301091 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 50.0 5.05e-01 100.0% 95.6%
3510907 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.59 50.0 5.05e-01 100.0% 97.7%
3522226 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.58 50.0 4.83e-01 97.8% 89.0%
4398429 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.58 46.0 4.82e-01 93.3% 100.0%
3793066 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.56 49.0 4.89e-01 98.9% 98.9%
3642155 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.56 47.0 3.91e-01 95.5% 75.3%
3390155 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.56 48.0 4.89e-01 96.6% 100.0%
4308012 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.56 45.0 4.66e-01 89.9% 100.0%
5033910 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.55 46.0 4.17e-01 92.1% 98.4%
4938900 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.55 46.0 4.15e-01 98.9% 86.7%
4968129 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.55 46.0 4.40e-01 97.8% 85.7%
3600651 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 39.0 2.96e-01 75.3% 69.5%
4104868 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.54 37.0 4.15e-01 70.8% 98.5%
3603065 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.28e-01 97.8% 97.1%
4883863 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.53 42.0 4.33e-01 96.6% 96.4%
5057156 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.19e-01 100.0% 81.7%
5062134 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.53 44.0 4.15e-01 97.8% 80.0%
4968130 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.53 43.0 4.20e-01 95.5% 85.7%
5083731 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.53 44.0 4.14e-01 98.9% 80.0%
4365245 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 40.0 3.63e-01 83.1% 99.2%
4025995 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 38.0 2.92e-01 79.8% 66.7%
4950571 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.52 43.0 3.91e-01 98.9% 74.8%
4022791 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.51 39.0 3.13e-01 80.9% 81.4%
3707942 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 41.0 3.91e-01 100.0% 74.8%
4636438 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 38.0 3.47e-01 79.8% 99.2%
3990703 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 38.0 3.15e-01 80.9% 43.6%
3260630 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.50 36.0 2.90e-01 75.3% 80.0%
D2 medium residues 1-54
PDB