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NC_019516.2__YP_007006118.1__F417_gp107__00130

Bact-Vir

NC_019516.2__YP_007006118.1__F417_gp107__00130

Identity

Accession:
NC_019516 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurunvirus› Cyanophage_S-TIM5

TaxID: 1137745

Cluster

View cluster (80 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-103
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00085.27 best Thioredoxin 24.8 2.60e-05 95.5% 71.8%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5gu7C01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.79 72.0 6.43e-01 100.0% 71.5%
4fybA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.78 71.0 5.77e-01 100.0% 65.8%
4hqsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.77 70.0 6.05e-01 98.9% 80.0%
3eytB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.77 70.0 5.81e-01 100.0% 76.6%
2fy6A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.77 70.0 5.96e-01 100.0% 77.6%
2f9sB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.77 70.0 6.02e-01 100.0% 77.2%
1kngA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.75 68.0 5.78e-01 100.0% 72.2%
3ha9A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.75 69.0 5.57e-01 100.0% 73.3%
3erwF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.73 65.0 5.67e-01 96.6% 79.4%
2ju5A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.73 66.0 5.90e-01 100.0% 79.0%
2r0cA03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.73 53.0 4.90e-01 100.0% 59.5%
3kcmF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.72 66.0 5.65e-01 100.0% 77.5%
3ihgA03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.71 60.0 5.12e-01 100.0% 58.5%
4agsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.69 53.0 5.42e-01 94.4% 85.9%
7miqA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 50.0 5.36e-01 95.5% 96.0%
4zkdA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 3.76e-01 100.0% 90.8%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 34.0 3.21e-01 82.0% 50.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3233138 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.84 77.0 6.32e-01 100.0% 58.0%
5040752 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.84 78.0 6.84e-01 100.0% 76.0%
3223389 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.83 75.0 6.94e-01 100.0% 78.2%
4988874 2485.1.1.37 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.80 72.0 6.24e-01 100.0% 66.2%
3684131 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.79 61.0 6.22e-01 88.8% 84.7%
4928301 2485.1.1.45 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.78 72.0 6.48e-01 100.0% 94.1%
3403412 2485.1.1.87 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.77 68.0 5.99e-01 100.0% 66.9%
4028204 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.76 56.0 5.85e-01 100.0% 85.0%
5039152 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.76 70.0 5.77e-01 100.0% 69.9%
5035267 2485.1.1.38 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 0.76 65.0 6.30e-01 100.0% 84.7%
4541696 2485.1.1.37 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.75 69.0 5.84e-01 100.0% 70.7%
3669436 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.74 61.0 6.20e-01 95.5% 94.1%
1196726 2485.1.1.37 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.73 66.0 5.61e-01 100.0% 68.1%
5048832 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.73 66.0 5.94e-01 100.0% 79.2%
3799812 2485.1.1.71 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SelP_N 0.72 64.0 6.09e-01 98.9% 100.0%
4103292 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.72 52.0 5.59e-01 93.3% 92.0%
3599072 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.70 53.0 5.60e-01 94.4% 90.0%
5068892 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.68 63.0 5.21e-01 100.0% 70.7%
4013126 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.68 60.0 5.99e-01 96.6% 94.4%
3680094 2485.1.1.3 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin 0.65 51.0 5.33e-01 95.5% 95.0%
4854385 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 49.0 4.92e-01 89.9% 87.5%
3957239 3781.1.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.57 30.0 3.81e-01 100.0% 97.8%
5082591 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.56 47.0 3.20e-01 95.5% 35.8%
3422502 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.53 29.0 2.82e-01 91.0% 42.9%
4044894 235.1.1.5 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly 0.52 40.0 2.89e-01 82.0% 57.6%