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NC_019516.2__YP_007006155.1__F417_gp068__00169

Bact-Vir

NC_019516.2__YP_007006155.1__F417_gp068__00169

Identity

Accession:
NC_019516 ↗
Kingdom:
phage

Quality

73.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurunvirus› Cyanophage_S-TIM5

TaxID: 1137745

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-138
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 60.0 6.07e-01 75.9% 95.3%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.81 67.0 6.65e-01 86.1% 96.4%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 53.0 6.08e-01 71.3% 92.3%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.80 64.0 6.46e-01 83.3% 89.7%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 62.0 6.57e-01 94.4% 91.7%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.79 53.0 6.11e-01 78.7% 93.7%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 62.0 6.29e-01 84.3% 96.2%
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.77 58.0 6.30e-01 83.3% 93.3%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.77 60.0 6.30e-01 82.4% 96.9%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.76 60.0 6.07e-01 82.4% 88.7%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.75 53.0 6.01e-01 73.1% 98.8%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 58.0 5.86e-01 81.5% 87.7%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 66.0 5.30e-01 93.5% 64.1%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 55.0 5.89e-01 76.9% 96.7%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.74 56.0 4.57e-01 78.7% 93.7%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 44.0 5.13e-01 74.1% 86.5%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.73 64.0 6.12e-01 97.2% 97.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.72 49.0 4.83e-01 79.6% 64.7%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 47.0 5.49e-01 83.3% 97.3%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.71 53.0 5.33e-01 83.3% 77.3%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.70 46.0 5.17e-01 80.6% 90.0%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.69 52.0 5.11e-01 78.7% 89.7%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 49.0 5.37e-01 77.8% 92.0%
3kp9A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.68 57.0 5.01e-01 91.7% 61.1%
2hz8A00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.67 51.0 5.02e-01 82.4% 75.7%
1sz9C00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 51.0 4.73e-01 100.0% 62.1%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 50.0 5.51e-01 84.3% 98.8%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.67 59.0 5.22e-01 94.4% 78.8%
4b94A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 49.0 4.53e-01 98.1% 58.9%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.67 49.0 5.30e-01 80.6% 92.1%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 56.0 5.01e-01 89.8% 91.9%
3kflA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.66 59.0 4.98e-01 96.3% 69.7%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 49.0 4.95e-01 79.6% 92.7%
3ce2A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.65 54.0 4.85e-01 90.7% 76.6%
2l6hA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.65 49.0 4.32e-01 77.8% 72.7%
4g80T00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.65 52.0 4.79e-01 86.1% 66.9%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.64 50.0 4.92e-01 81.5% 81.6%
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 50.0 4.83e-01 99.1% 72.8%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.60 48.0 4.99e-01 92.6% 93.0%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.59 46.0 4.99e-01 97.2% 96.7%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 49.0 4.52e-01 92.6% 80.1%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.58 40.0 4.42e-01 79.6% 91.6%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.57 50.0 4.69e-01 93.5% 82.8%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 47.0 4.26e-01 89.8% 93.8%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.56 45.0 4.12e-01 88.9% 98.0%
1d9cA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 42.0 4.06e-01 98.1% 70.2%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.53 47.0 4.20e-01 98.1% 70.2%
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 40.0 3.99e-01 83.3% 87.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3713159 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.83 65.0 6.24e-01 81.5% 84.2%
3737781 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.82 66.0 6.70e-01 83.3% 86.7%
3254975 603.2.1.2 ↗ alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.82 67.0 6.56e-01 85.2% 87.0%
3899930 603.1.1.1 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.82 74.0 5.88e-01 95.4% 100.0%
3609374 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.82 66.0 6.57e-01 84.3% 90.0%
3432720 604.1.1.118 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › GOSR1_N 0.81 64.0 5.78e-01 83.3% 74.5%
1019364 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.80 64.0 6.37e-01 83.3% 86.5%
4980864 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.80 64.0 6.09e-01 83.3% 78.0%
4028818 603.1.1.17 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.80 74.0 5.86e-01 100.0% 82.4%
3602716 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.80 63.0 6.03e-01 83.3% 77.6%
4033307 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.80 63.0 4.98e-01 83.3% 45.7%
3497418 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.79 62.0 6.45e-01 83.3% 88.0%
4360597 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.79 61.0 5.17e-01 80.6% 52.9%
5046942 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.78 62.0 4.81e-01 83.3% 46.7%
3987180 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.78 62.0 4.93e-01 83.3% 47.3%
5063573 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.78 60.0 4.90e-01 79.6% 50.3%
4936312 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.78 62.0 6.19e-01 83.3% 87.3%
5078867 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 58.0 6.33e-01 78.7% 94.4%
3273217 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.77 60.0 6.32e-01 85.2% 92.6%
4962592 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.76 60.0 6.29e-01 83.3% 93.0%
4995305 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.76 58.0 6.16e-01 79.6% 92.6%
4944710 604.5.1.82 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TrkA_C 0.76 60.0 6.39e-01 83.3% 96.8%
3441715 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.76 68.0 6.81e-01 95.4% 97.3%
4018180 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.76 60.0 4.50e-01 83.3% 63.9%
3398622 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.76 58.0 6.22e-01 82.4% 95.6%
3272287 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.76 55.0 5.69e-01 75.0% 86.0%
4025328 603.1.1.228 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, STX6_10_61_N 0.75 67.0 5.35e-01 98.1% 72.9%
3484929 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.74 58.0 5.98e-01 82.4% 96.0%
5011234 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.73 58.0 4.57e-01 82.4% 44.3%
5008560 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.73 48.0 4.92e-01 81.5% 68.6%
4033317 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.73 51.0 4.09e-01 71.3% 71.0%
4108644 603.1.1.215 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27853 0.72 54.0 5.45e-01 79.6% 87.3%
3472905 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.72 56.0 4.62e-01 83.3% 48.2%
3808040 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.72 54.0 4.53e-01 79.6% 84.7%
3953242 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.71 64.0 5.29e-01 97.2% 88.6%
3256821 603.1.1.99 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.71 56.0 5.47e-01 84.3% 76.7%
3841658 604.10.1.12 ↗ alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › PF27853 0.71 54.0 5.40e-01 80.6% 86.4%
4195230 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.71 55.0 5.35e-01 82.4% 95.8%
4982185 604.12.1.144 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF27307 0.70 53.0 5.41e-01 79.6% 91.3%
3213117 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.70 56.0 5.92e-01 92.6% 96.8%
3530449 604.12.1.131 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF27853 0.70 54.0 5.52e-01 82.4% 90.5%
5084013 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 53.0 5.36e-01 83.3% 80.0%
3459951 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 55.0 5.49e-01 84.3% 96.4%
3694634 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.68 47.0 3.27e-01 70.4% 38.2%
3927348 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 61.0 5.11e-01 100.0% 67.0%
3592972 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.68 49.0 3.99e-01 74.1% 72.3%
3836003 3684.1.1.2 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.68 51.0 4.17e-01 80.6% 91.2%
3550615 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 61.0 5.29e-01 100.0% 78.8%
4947351 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.67 58.0 4.92e-01 93.5% 78.9%
5048496 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 53.0 4.32e-01 86.1% 90.2%
3804981 192.29.1.7 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM192 0.67 53.0 4.69e-01 84.3% 63.2%
3593724 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 51.0 4.86e-01 82.4% 81.6%
5055960 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.66 50.0 4.84e-01 79.6% 77.5%
3786522 604.6.1.22 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 0.65 50.0 5.01e-01 81.5% 86.4%
5047547 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.65 51.0 5.05e-01 86.1% 95.7%
4956683 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 48.0 4.95e-01 82.4% 91.0%
3168656 604.5.1.64 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › EMC4 0.62 49.0 4.87e-01 84.3% 88.2%
4000290 192.29.1.188 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › F_actin_bind 0.55 51.0 4.78e-01 100.0% 93.8%