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NC_019516.2__YP_010419866.1__F417_gp050__00187

Bact-Vir

NC_019516.2__YP_010419866.1__F417_gp050__00187

Identity

Accession:
NC_019516 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-78
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 55.0 5.69e-01 85.1% 82.3%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.76 38.0 3.79e-01 94.0% 47.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 60.0 5.53e-01 85.1% 70.2%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.47e-01 85.1% 80.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.98e-01 85.1% 98.1%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.73e-01 88.1% 88.1%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 4.96e-01 85.1% 72.7%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 5.70e-01 82.1% 100.0%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 5.62e-01 83.6% 100.0%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.39e-01 85.1% 81.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 4.87e-01 85.1% 66.3%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.52e-01 85.1% 93.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 4.82e-01 85.1% 64.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 5.05e-01 85.1% 87.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 4.91e-01 83.6% 72.4%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 46.0 3.62e-01 73.1% 79.7%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.65 45.0 4.06e-01 89.6% 52.7%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 4.37e-01 92.5% 85.0%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.33e-01 85.1% 78.7%
3kf8B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 51.0 4.25e-01 88.1% 74.2%
4rljB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 44.0 3.39e-01 71.6% 88.4%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 45.0 3.67e-01 74.6% 73.0%
2j5uA03 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.63 43.0 4.08e-01 89.6% 58.7%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 45.0 3.46e-01 77.6% 58.2%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 3.79e-01 85.1% 61.0%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 45.0 3.46e-01 77.6% 61.1%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 5.19e-01 91.0% 93.8%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.61 44.0 3.90e-01 77.6% 89.0%
2o3oA02 3.30.310.160 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 0.61 43.0 3.61e-01 76.1% 57.5%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 3.80e-01 89.6% 41.7%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.59 43.0 3.53e-01 76.1% 65.0%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 4.00e-01 83.6% 78.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.85e-01 83.6% 77.8%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.59 44.0 3.54e-01 80.6% 88.7%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 43.0 3.08e-01 79.1% 87.7%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.58 45.0 4.71e-01 83.6% 96.6%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.57 39.0 3.63e-01 70.1% 83.3%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 43.0 3.72e-01 85.1% 50.5%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.57 46.0 4.45e-01 92.5% 94.7%
2le1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 40.0 3.09e-01 76.1% 57.6%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 40.0 3.18e-01 76.1% 61.0%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.56e-01 82.1% 81.6%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.63e-01 82.1% 95.0%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.55 42.0 3.39e-01 83.6% 67.6%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 40.0 3.57e-01 80.6% 85.0%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.71e-01 100.0% 86.8%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.61e-01 92.5% 88.2%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.54 40.0 3.47e-01 82.1% 92.7%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 3.76e-01 77.6% 71.6%
5ksdA04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 37.0 3.00e-01 74.6% 93.9%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.53 43.0 3.52e-01 91.0% 91.5%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 38.0 2.58e-01 88.1% 19.8%
4ipuA00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.52 36.0 2.90e-01 71.6% 78.1%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 38.0 2.95e-01 79.1% 58.5%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 40.0 3.07e-01 89.6% 69.9%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3737903 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.80 52.0 5.66e-01 80.6% 81.8%
3922679 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.79 52.0 5.94e-01 80.6% 90.0%
3707634 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 53.0 5.82e-01 83.6% 87.3%
5042892 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.77 56.0 5.87e-01 85.1% 85.0%
3173156 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.77 59.0 5.62e-01 89.6% 70.0%
3328647 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.76 60.0 5.50e-01 89.6% 65.9%
3190835 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.76 52.0 4.83e-01 83.6% 56.5%
3507639 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.75 57.0 5.68e-01 85.1% 78.6%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.74 60.0 5.60e-01 85.1% 76.2%
3703932 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.77e-01 85.1% 88.3%
3504417 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 60.0 5.40e-01 100.0% 65.6%
4026408 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.73 56.0 4.91e-01 85.1% 55.0%
3819397 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.73 59.0 5.56e-01 89.6% 72.5%
3598283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 56.0 4.47e-01 91.0% 42.3%
3847592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 53.0 3.17e-01 80.6% 11.1%
3924213 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 58.0 5.18e-01 100.0% 62.1%
3825252 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.09e-01 85.1% 75.6%
3786412 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.71 59.0 5.56e-01 89.6% 80.0%
3625817 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.71 55.0 5.19e-01 85.1% 70.0%
3395150 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.41e-01 85.1% 86.7%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.70 55.0 5.20e-01 85.1% 76.2%
3214326 4.1.1.81 beta barrels › SH3 › SH3 › SH3 › LSM14 0.70 55.0 5.50e-01 85.1% 81.4%
3721787 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.29e-01 89.6% 78.8%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.70 54.0 4.38e-01 89.6% 45.8%
3926118 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.70 52.0 5.51e-01 82.1% 88.3%
3625263 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.39e-01 100.0% 89.0%
4268386 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.19e-01 89.6% 77.1%
4422252 4.1.1.455 beta barrels › SH3 › SH3 › SH3 › DSRB 0.69 53.0 5.60e-01 82.1% 93.3%
4882197 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.69 53.0 4.43e-01 83.6% 53.4%
3272363 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 56.0 5.04e-01 89.6% 63.2%
3928430 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.69 53.0 5.27e-01 83.6% 78.6%
157624 4.1.1.47 beta barrels › SH3 › SH3 › SH3 › Gemin6 0.69 52.0 4.82e-01 85.1% 64.0%
3487837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 4.21e-01 95.5% 46.0%
3301015 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.46e-01 85.1% 89.2%
3356605 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 55.0 4.96e-01 86.6% 81.1%
3347865 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.68 52.0 4.33e-01 83.6% 67.5%
3879653 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.68 51.0 5.10e-01 83.6% 77.1%
3886139 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 53.0 5.44e-01 86.6% 87.7%
3397845 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 52.0 4.48e-01 83.6% 59.0%
3942526 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.67 57.0 5.35e-01 100.0% 76.5%
3684460 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.67 58.0 5.15e-01 95.5% 90.5%
4126278 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.66 46.0 3.12e-01 71.6% 35.3%
3207081 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 49.0 5.05e-01 80.6% 93.8%
5011460 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.08e-01 85.1% 81.4%
3786518 4.8.1.18 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Myosin_N 0.65 49.0 5.00e-01 80.6% 87.7%
3678872 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.65 54.0 5.19e-01 89.6% 92.0%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.17e-01 83.6% 89.1%
4948178 4.1.1.484 beta barrels › SH3 › SH3 › SH3 › Lsm_C 0.65 50.0 4.96e-01 83.6% 80.0%
3710595 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 57.0 4.82e-01 97.0% 90.0%
4293453 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.20e-01 100.0% 80.0%
3848399 4.8.1.24 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.64 52.0 5.13e-01 89.6% 82.9%
4028997 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 4.48e-01 83.6% 78.9%
4011774 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 47.0 3.32e-01 80.6% 51.4%
3342793 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 55.0 3.99e-01 98.5% 53.2%
4646862 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.62 45.0 3.87e-01 79.1% 77.3%
5057746 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.61 46.0 3.28e-01 86.6% 28.2%
4961818 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 54.0 5.22e-01 100.0% 89.3%
4279225 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.61 45.0 3.74e-01 79.1% 70.8%
3210897 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.97e-01 100.0% 83.5%
3806487 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.61 47.0 3.77e-01 88.1% 84.8%
None 0.59 45.0 2.79e-01 83.6% 38.1%
3257650 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 53.0 4.93e-01 100.0% 95.3%
4398032 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.58 42.0 3.53e-01 83.6% 45.2%
4023069 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.57 49.0 3.94e-01 95.5% 83.6%
3390503 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.57 47.0 4.79e-01 94.0% 90.8%
4147685 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.56 42.0 3.59e-01 85.1% 49.1%
3515504 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.56 36.0 3.84e-01 74.6% 76.3%
3409554 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.55 45.0 4.07e-01 91.0% 78.9%
3187350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.80e-01 95.5% 96.9%
3831607 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.55 44.0 2.85e-01 88.1% 84.1%
3619778 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 39.0 2.70e-01 77.6% 30.4%
3323289 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 39.0 3.86e-01 74.6% 77.1%
3333660 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 42.0 3.39e-01 91.0% 78.8%
412674 9.1.1.3 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › His_binding 0.54 47.0 3.76e-01 100.0% 86.8%
3279044 2.1.1.314 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 0.54 38.0 3.93e-01 74.6% 81.5%
3991019 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.54 47.0 4.77e-01 95.5% 98.5%
3479461 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 45.0 3.27e-01 95.5% 70.2%
3755055 331.1.1.12 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF155 0.52 38.0 3.05e-01 76.1% 49.6%
4032294 3389.1.1.1 a+b two layers › hypothetical protein SAV0303 › hypothetical protein SAV0303 › hypothetical protein SAV0303 › DUF4467 0.51 45.0 3.94e-01 97.0% 94.9%
3194506 220.1.1.201 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.50 40.0 3.49e-01 91.0% 74.5%