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NC_019518.1__YP_007006408.1__F397_gp19__00019
Bact-VirNC_019518.1__YP_007006408.1__F397_gp19__00019
Identity
- Accession:
- NC_019518 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-181
Domain cluster:
rep: IMGVR_UViG_2554235476_000008-2554235476-2556095468__D93-276
D2
high
residues 212-319
Domain cluster:
rep: IMGVR_UViG_3300014491_000362-3300014491-Ga0182014_100193425__D116-194
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22763.2 best | NrS1-1_pol-like_HBD | 66.8 | 1.80e-18 | 53.7% | 87.5% |
D3
high
residues 339-469
Domain cluster:
rep: KY379511.2__AQN32312.1__X__00030__D293-411
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.69 | 41.0 | 4.86e-01 | 96.9% | 85.6% |
| 2w3sA05 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.67 | 42.0 | 4.62e-01 | 98.5% | 78.8% |
| 5y6qB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.64 | 40.0 | 4.38e-01 | 99.2% | 76.4% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.64 | 35.0 | 3.94e-01 | 100.0% | 68.0% |
| 4h9nC00 | 1.20.58.2170 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 35.0 | 2.99e-01 | 100.0% | 33.2% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 42.0 | 4.06e-01 | 100.0% | 63.8% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.56 | 44.0 | 4.11e-01 | 100.0% | 67.1% |
| 3vkgA09 | 1.20.920.30 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.54 | 45.0 | 4.34e-01 | 100.0% | 79.2% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.53 | 39.0 | 3.76e-01 | 87.8% | 67.3% |
| 2dkwA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.53 | 41.0 | 4.11e-01 | 100.0% | 80.9% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.53 | 25.0 | 3.38e-01 | 97.7% | 87.9% |
| 3f61A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 32.0 | 2.95e-01 | 95.4% | 46.2% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 32.0 | 3.78e-01 | 96.2% | 94.0% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 31.0 | 3.43e-01 | 90.1% | 72.2% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.51 | 31.0 | 3.44e-01 | 87.0% | 77.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3278112 | 4953.1.1.25 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF4226 | 0.66 | 50.0 | 5.40e-01 | 99.2% | 94.5% |
| 4107263 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.66 | 45.0 | 4.31e-01 | 100.0% | 60.7% |
| 3915655 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 31.0 | 4.13e-01 | 88.5% | 85.7% |
| 3959833 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.63 | 39.0 | 4.35e-01 | 99.2% | 77.1% |
| 3405141 | 7579.1.1.10 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Thioesterase | 0.59 | 40.0 | 3.03e-01 | 99.2% | 30.2% |
| 4024559 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.59 | 35.0 | 3.17e-01 | 94.7% | 42.1% |
| 25624 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.59 | 23.0 | 3.68e-01 | 93.9% | 94.2% |
| 3602440 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.57 | 34.0 | 3.96e-01 | 96.9% | 87.1% |
| 4961538 | 2002.1.1.256 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C | 0.56 | 41.0 | 2.89e-01 | 75.6% | 24.9% |
| 5024277 | 1079.1.1.19 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DUF2162 | 0.56 | 46.0 | 3.99e-01 | 88.5% | 84.5% |
| 4679970 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.54 | 27.0 | 3.04e-01 | 96.2% | 59.0% |
| 3414711 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.53 | 40.0 | 3.63e-01 | 81.7% | 87.4% |
| 3712540 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.52 | 40.0 | 3.75e-01 | 80.2% | 100.0% |
| 3282729 | 1174.1.1.2 ↗ | alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › LtrA | 0.52 | 45.0 | 3.96e-01 | 96.2% | 76.1% |
| 3513146 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 36.0 | 3.06e-01 | 71.0% | 87.9% |
| 4066013 | 601.1.2.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ | 0.51 | 42.0 | 3.64e-01 | 90.8% | 71.6% |
D4
high
residues 733-825
Domain cluster:
rep: OP947165.1__WBC28483.1__TPMD03_13__00014__D714-806
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a07J00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 48.0 | 5.07e-01 | 94.6% | 84.3% |
| 3tgnB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 43.0 | 5.01e-01 | 94.6% | 100.0% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.65 | 44.0 | 3.35e-01 | 100.0% | 29.3% |
| 2lsoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 49.0 | 5.15e-01 | 97.8% | 90.4% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 5.36e-01 | 100.0% | 100.0% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 45.0 | 4.55e-01 | 97.8% | 75.8% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 43.0 | 4.49e-01 | 98.9% | 77.0% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 4.91e-01 | 96.8% | 100.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 4.47e-01 | 100.0% | 76.7% |
| 3jtgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 50.0 | 5.21e-01 | 92.5% | 97.6% |
| 4rayA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 4.54e-01 | 98.9% | 81.2% |
| 2ch0A01 | 1.10.10.1180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain | 0.61 | 43.0 | 4.31e-01 | 92.5% | 70.4% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 4.46e-01 | 100.0% | 72.4% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 43.0 | 4.17e-01 | 98.9% | 66.7% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 4.42e-01 | 100.0% | 72.8% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 4.09e-01 | 96.8% | 65.7% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 3.55e-01 | 97.8% | 46.5% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 41.0 | 4.16e-01 | 100.0% | 73.1% |
| 2l02A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 4.22e-01 | 100.0% | 80.5% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 4.19e-01 | 100.0% | 70.8% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 4.16e-01 | 100.0% | 71.8% |
| 5f7qC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 4.54e-01 | 98.9% | 100.0% |
| 2zbkA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 4.06e-01 | 95.7% | 65.3% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.56 | 42.0 | 4.42e-01 | 96.8% | 91.4% |
| 2qbyA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 4.14e-01 | 100.0% | 82.2% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.55 | 48.0 | 4.47e-01 | 100.0% | 78.9% |
| 1kyzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 4.15e-01 | 98.9% | 76.7% |
| 5dcaA11 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 47.0 | 4.58e-01 | 100.0% | 86.7% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.81e-01 | 96.8% | 70.0% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.78e-01 | 95.7% | 71.3% |
| 1o57A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 4.15e-01 | 97.8% | 97.2% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.52 | 33.0 | 3.40e-01 | 78.5% | 67.8% |
| 7k0aA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 44.0 | 3.57e-01 | 96.8% | 66.0% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 4.16e-01 | 88.2% | 96.1% |
| 3d01E00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.51 | 39.0 | 3.32e-01 | 96.8% | 49.0% |
| 8agaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.28e-01 | 74.2% | 100.0% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3174480 | 101.1.2.527 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 | 0.65 | 51.0 | 4.90e-01 | 93.5% | 72.7% |
| 4018469 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 48.0 | 4.66e-01 | 97.8% | 71.4% |
| 4238039 | 101.1.1.68 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 | 0.64 | 41.0 | 4.74e-01 | 98.9% | 100.0% |
| 5061948 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.62 | 49.0 | 4.27e-01 | 100.0% | 55.6% |
| 3254281 | 3241.1.1.1 ↗ | alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 | 0.61 | 42.0 | 3.15e-01 | 72.0% | 97.1% |
| 3163573 | 101.1.2.52 ↗ | alpha arrays › HTH › HTH › winged helix domain › KicB | 0.61 | 49.0 | 4.62e-01 | 95.7% | 71.3% |
| 4980135 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 4.25e-01 | 96.8% | 66.7% |
| 5028329 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 44.0 | 4.83e-01 | 100.0% | 96.0% |
| 5077965 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 42.0 | 3.59e-01 | 96.8% | 44.7% |
| 3390936 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.60 | 43.0 | 4.27e-01 | 100.0% | 71.0% |
| 2036621 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.60 | 45.0 | 4.42e-01 | 100.0% | 72.8% |
| 5064203 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 44.0 | 4.52e-01 | 100.0% | 81.1% |
| 3347818 | 101.1.2.529 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7599 | 0.60 | 44.0 | 4.82e-01 | 100.0% | 98.7% |
| 5003621 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 44.0 | 4.46e-01 | 100.0% | 77.9% |
| 3355197 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 44.0 | 4.37e-01 | 96.8% | 74.0% |
| 3988732 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.59 | 42.0 | 4.04e-01 | 96.8% | 63.9% |
| 2526893 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.59 | 46.0 | 4.30e-01 | 96.8% | 66.4% |
| 4933315 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 43.0 | 4.61e-01 | 100.0% | 90.0% |
| 5057920 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.59 | 45.0 | 4.74e-01 | 100.0% | 90.6% |
| 3820802 | 101.1.2.529 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7599 | 0.59 | 46.0 | 4.42e-01 | 100.0% | 71.8% |
| 3516107 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.58 | 50.0 | 4.71e-01 | 100.0% | 76.5% |
| 4310506 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.58 | 49.0 | 3.65e-01 | 94.6% | 37.3% |
| 3376444 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.58 | 44.0 | 4.12e-01 | 98.9% | 65.2% |
| 4960288 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 43.0 | 3.57e-01 | 100.0% | 42.3% |
| 3420624 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.58 | 46.0 | 4.43e-01 | 96.8% | 75.2% |
| 3702324 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 52.0 | 5.08e-01 | 98.9% | 93.0% |
| 2409292 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 43.0 | 4.16e-01 | 100.0% | 70.2% |
| 3519165 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 45.0 | 4.68e-01 | 94.6% | 92.9% |
| 3773056 | 101.1.2.512 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25877 | 0.58 | 41.0 | 4.53e-01 | 93.5% | 98.6% |
| 4930418 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.58 | 43.0 | 4.29e-01 | 98.9% | 76.8% |
| 3785509 | 101.1.2.113 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 | 0.58 | 48.0 | 3.81e-01 | 94.6% | 45.9% |
| 154263 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.57 | 43.0 | 4.16e-01 | 100.0% | 71.8% |
| 5060792 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.57 | 43.0 | 3.97e-01 | 100.0% | 61.3% |
| 3405208 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 4.54e-01 | 100.0% | 93.8% |
| 3412336 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 4.49e-01 | 94.6% | 88.2% |
| 3944118 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 4.18e-01 | 100.0% | 78.9% |
| 5001357 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.65e-01 | 100.0% | 86.0% |
| 5001098 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 42.0 | 4.31e-01 | 98.9% | 83.3% |
| 338970 | 4964.1.1.3 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › N4_RNAP_helical | 0.56 | 46.0 | 3.31e-01 | 94.6% | 87.5% |
| 4388536 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.56 | 38.0 | 4.35e-01 | 95.7% | 100.0% |
| 3990493 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.65e-01 | 100.0% | 92.2% |
| 4443065 | 101.1.2.89 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR | 0.56 | 44.0 | 4.47e-01 | 97.8% | 86.3% |
| 3821340 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.56 | 43.0 | 3.79e-01 | 98.9% | 54.5% |
| 5046890 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 45.0 | 3.92e-01 | 95.7% | 58.6% |
| 4938083 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.55 | 45.0 | 3.38e-01 | 92.5% | 55.4% |
| 3491623 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 48.0 | 4.37e-01 | 97.8% | 79.2% |
| 3792911 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.55 | 45.0 | 4.23e-01 | 100.0% | 73.9% |
| 3940330 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.54 | 41.0 | 4.28e-01 | 95.7% | 90.4% |
| 3632795 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.54 | 45.0 | 4.32e-01 | 96.8% | 78.2% |
| 4957834 | 101.1.2.920 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TbsP_C | 0.54 | 39.0 | 3.64e-01 | 97.8% | 60.0% |
| 3784677 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.53 | 44.0 | 3.41e-01 | 96.8% | 39.1% |
| 5080548 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 4.15e-01 | 94.6% | 97.3% |
| 5035276 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.99e-01 | 94.6% | 85.6% |
| 3843442 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.52 | 41.0 | 3.85e-01 | 98.9% | 68.8% |
| 4964911 | 101.1.2.920 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TbsP_C | 0.51 | 38.0 | 3.48e-01 | 96.8% | 59.2% |
| 4232356 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.51 | 43.0 | 2.73e-01 | 96.8% | 17.7% |
| 3214720 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.51 | 31.0 | 3.13e-01 | 81.7% | 60.0% |
D5
medium
residues 514-568_637-731
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 53.0 | 4.81e-01 | 96.0% | 90.8% |
| 1c3qA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 36.0 | 2.96e-01 | 70.0% | 89.8% |
| 5ceeA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 42.0 | 3.71e-01 | 89.3% | 88.8% |
| 3czpB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 3.55e-01 | 82.0% | 99.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022020 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.68 | 63.0 | 5.17e-01 | 100.0% | 82.3% |
| 5029777 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.68 | 62.0 | 5.20e-01 | 100.0% | 82.0% |
| 5003620 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.67 | 62.0 | 4.75e-01 | 100.0% | 60.9% |
| 4973289 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 61.0 | 5.00e-01 | 99.3% | 81.5% |
| 3471078 | 2007.5.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase | 0.52 | 39.0 | 3.29e-01 | 79.3% | 97.1% |
| 3450433 | 2007.6.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 | 0.52 | 40.0 | 3.93e-01 | 81.3% | 90.6% |
| 5044546 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.52 | 39.0 | 3.79e-01 | 79.3% | 81.7% |
| 3959455 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 32.0 | 3.41e-01 | 74.0% | 68.9% |
| 4984584 | 2004.1.1.206 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 | 0.50 | 42.0 | 3.49e-01 | 91.3% | 92.6% |
D6
medium
residues 569-636
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ol9A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 43.0 | 3.28e-01 | 100.0% | 30.6% |
| 3ievA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 47.0 | 3.47e-01 | 100.0% | 33.9% |
| 1o2dA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 45.0 | 3.44e-01 | 94.1% | 78.0% |
| 5j60B02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 37.0 | 3.14e-01 | 100.0% | 40.0% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 34.0 | 3.81e-01 | 94.1% | 86.0% |
| 8c0zE01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 37.0 | 3.06e-01 | 98.5% | 37.4% |
| 8a57D02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 3.35e-01 | 100.0% | 63.9% |
| 1mjtA02 | 3.90.440.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase;Heme Domain; Chain A, domain 2 › Nitric Oxide Synthase;Heme Domain;Chain A domain 2 | 0.52 | 37.0 | 3.38e-01 | 75.0% | 95.8% |
| 3l8kA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 34.0 | 2.91e-01 | 98.5% | 37.9% |
| 1lyvA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 43.0 | 2.94e-01 | 100.0% | 52.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4246959 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.58 | 47.0 | 3.91e-01 | 91.2% | 68.0% |
| 4027764 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.57 | 50.0 | 3.65e-01 | 100.0% | 63.6% |
| 5070184 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.56 | 45.0 | 3.91e-01 | 91.2% | 73.6% |
| 5051372 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 45.0 | 3.36e-01 | 100.0% | 79.5% |
| 5018370 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 43.0 | 3.71e-01 | 91.2% | 76.4% |
| 4954775 | 2003.1.11.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh | 0.51 | 35.0 | 3.09e-01 | 100.0% | 44.5% |
| 3495801 | 523.1.1.0 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain | 0.51 | 35.0 | 3.31e-01 | 72.1% | 91.8% |
| 2884306 | 523.1.1.2 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_bL9m_C | 0.51 | 35.0 | 3.17e-01 | 72.1% | 78.0% |