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NC_019518.1__YP_007006443.1__F397_gp54__00054
Bact-VirNC_019518.1__YP_007006443.1__F397_gp54__00054
Identity
- Accession:
- NC_019518 ↗
- Kingdom:
- phage
Quality
54.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-189
Domain cluster:
rep: JQ066768.1__AFA44858.1__RcapNL_00018__00018__D87-256
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.63 | 35.0 | 4.20e-01 | 78.5% | 81.8% |
| 3egqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 32.0 | 3.02e-01 | 77.0% | 39.6% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 34.0 | 3.81e-01 | 83.7% | 76.7% |
| 3tacB01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.52 | 36.0 | 3.73e-01 | 96.3% | 74.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945172 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.78 | 71.0 | 6.04e-01 | 100.0% | 62.4% |
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.72 | 66.0 | 5.70e-01 | 100.0% | 84.8% |
| 4992168 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.65 | 41.0 | 4.85e-01 | 80.7% | 93.3% |
| 4955203 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.53 | 30.0 | 2.54e-01 | 80.7% | 30.9% |
| 4931818 | 5051.1.1.1 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF | 0.52 | 42.0 | 2.95e-01 | 85.9% | 93.7% |
| 1503419 | 3919.1.1.1 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD9_HN | 0.52 | 33.0 | 3.55e-01 | 78.5% | 73.1% |
D2
medium
residues 1-54_196-260