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NC_019519.1__YP_007006577.1__F406_gp121__00121

Bact-Vir

NC_019519.1__YP_007006577.1__F406_gp121__00121

Identity

Accession:
NC_019519 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schmittlotzvirus› Agrobacterium_phage_7-7-1

TaxID: 1161931

Cluster

View cluster (247 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-42_61-126
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.76 65.0 6.45e-01 91.5% 97.3%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.76 59.0 6.15e-01 81.1% 100.0%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.72 53.0 5.03e-01 91.5% 65.6%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 52.0 5.47e-01 92.5% 86.2%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 53.0 5.38e-01 87.7% 82.4%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.67 51.0 4.25e-01 79.2% 52.9%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 57.0 5.19e-01 94.3% 80.3%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 55.0 4.43e-01 92.5% 70.6%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.64 53.0 5.25e-01 88.7% 92.7%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.63 45.0 5.19e-01 78.3% 100.0%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.63 48.0 4.06e-01 85.8% 49.1%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 45.0 4.72e-01 74.5% 100.0%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 34.0 3.09e-01 91.5% 42.0%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.59 40.0 4.35e-01 70.8% 100.0%
1y7eA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.53 37.0 3.57e-01 70.8% 100.0%
4ckbD02 3.20.100.20 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › 0.52 43.0 3.55e-01 93.4% 64.4%
2vvdA00 2.60.120.720 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 3.24e-01 74.5% 58.0%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.51 35.0 3.47e-01 88.7% 66.4%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.97e-01 89.6% 75.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590201 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.84 72.0 7.22e-01 90.6% 100.0%
4032883 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.82 70.0 7.10e-01 89.6% 100.0%
4032900 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 68.0 6.85e-01 86.8% 100.0%
119252 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.76 65.0 6.45e-01 91.5% 97.3%
2642578 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.75 65.0 6.42e-01 91.5% 99.1%
4318415 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 54.0 5.73e-01 92.5% 87.4%
5079927 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 50.0 5.39e-01 73.6% 100.0%
4879695 1.1.13.29 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.69 62.0 5.72e-01 97.2% 91.7%
3404225 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 51.0 4.07e-01 91.5% 39.5%
4988096 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 57.0 5.56e-01 90.6% 100.0%
3507788 11.1.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta 0.66 47.0 4.09e-01 73.6% 65.4%
5037173 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 47.0 4.95e-01 73.6% 93.7%
4033712 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 50.0 5.51e-01 81.1% 100.0%
4966449 1.1.13.72 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CBS 0.65 54.0 5.65e-01 94.3% 97.9%
4669352 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 54.0 5.37e-01 95.3% 94.5%
4982501 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 51.0 5.40e-01 94.3% 100.0%
3545090 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.61 47.0 3.72e-01 83.0% 81.8%
1005534 1.1.7.37 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FlgT_C 0.59 41.0 4.36e-01 70.8% 100.0%
3867774 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.59 49.0 3.14e-01 90.6% 22.3%
3477515 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.59 41.0 4.02e-01 71.7% 74.8%
3723374 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 49.0 3.44e-01 92.5% 35.6%
3251320 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 50.0 3.78e-01 97.2% 51.0%
4109849 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.56 41.0 4.50e-01 90.6% 96.5%
4001104 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.56 40.0 3.33e-01 73.6% 69.7%
3772106 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.54 48.0 3.73e-01 96.2% 46.7%
3448643 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 47.0 3.81e-01 99.1% 72.7%
4424212 2492.1.1.6 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › A_deamin 0.52 43.0 2.95e-01 89.6% 62.1%
4655959 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 3.41e-01 72.6% 66.0%
3894561 221.1.2.16 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.50 36.0 3.71e-01 95.3% 79.0%