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NC_019526.1__YP_007007280.1__F403_gp410__00125

Bact-Vir

NC_019526.1__YP_007007280.1__F403_gp410__00125

Identity

Accession:
NC_019526 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alcyoneusvirus› Klebsiella_phage_vB_KleM_RaK2

TaxID: 1147094

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-99
PDB
Domain cluster: rep: BML_coassembly_scaffold_25_prodigal-single.1__X__X__00264__D1-97
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.78 42.0 3.77e-01 95.5% 39.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.71 36.0 3.51e-01 94.4% 42.2%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 32.0 3.77e-01 91.0% 61.5%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 38.0 4.64e-01 94.4% 88.9%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 35.0 4.03e-01 93.3% 71.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 38.0 4.66e-01 94.4% 98.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 36.0 4.55e-01 93.3% 100.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.59 38.0 3.54e-01 95.5% 53.2%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 3.76e-01 98.9% 65.9%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 3.85e-01 100.0% 67.4%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 3.83e-01 100.0% 68.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 36.0 4.00e-01 94.4% 85.7%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 45.0 3.34e-01 91.0% 75.1%
4qy7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 4.40e-01 85.4% 100.0%
1rypC00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 43.0 3.22e-01 89.9% 75.8%
4ljzC06 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 34.0 3.75e-01 95.5% 78.7%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 39.0 4.25e-01 93.3% 95.9%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 3.94e-01 100.0% 72.1%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 31.0 3.36e-01 87.6% 70.4%
2i0kA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.53 40.0 2.94e-01 84.3% 65.7%
1un2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 39.0 3.09e-01 78.7% 79.0%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 43.0 3.21e-01 92.1% 75.7%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 42.0 3.30e-01 93.3% 82.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4128902 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.94 48.0 6.50e-01 95.5% 92.0%
5025104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.90 47.0 6.33e-01 96.6% 94.0%
4957350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 43.0 5.00e-01 94.4% 67.7%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.85 42.0 4.94e-01 95.5% 67.7%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.83 43.0 5.78e-01 95.5% 95.8%
5064457 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.82 44.0 4.97e-01 96.6% 68.6%
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 40.0 5.12e-01 94.4% 90.0%
3784334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 40.0 4.75e-01 94.4% 75.0%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 39.0 4.78e-01 95.5% 81.8%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.74 38.0 4.74e-01 95.5% 81.8%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 38.0 4.53e-01 93.3% 75.9%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 46.0 5.23e-01 94.4% 84.3%
4484974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.48e-01 95.5% 71.8%
3801650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.45e-01 92.1% 70.0%
5057445 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.63 44.0 4.49e-01 100.0% 74.1%
3514522 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.62 45.0 4.87e-01 93.3% 90.7%
3387378 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 41.0 4.23e-01 96.6% 71.8%
3586953 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 38.0 4.29e-01 93.3% 84.6%
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 38.0 4.23e-01 93.3% 82.9%
3244277 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 44.0 4.25e-01 86.5% 71.0%
3282357 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.55 46.0 3.11e-01 94.4% 74.3%
3275383 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.55 47.0 3.55e-01 95.5% 82.3%
2559811 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.53 40.0 4.21e-01 95.5% 93.4%
4887391 4042.1.1.1 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6 0.53 34.0 2.96e-01 95.5% 43.1%
4131962 7506.1.1.1 ↗ a/b three-layered sandwiches › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › GerA 0.51 44.0 4.03e-01 98.9% 87.5%
4928312 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.50 41.0 3.26e-01 92.1% 88.2%