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NC_019527.1__YP_007007719.1__F394_gp30__00030

Bact-Vir

NC_019527.1__YP_007007719.1__F394_gp30__00030

Identity

Accession:
NC_019527 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Popoffvirus› Aeromonas_phage_vB_AsaM-56

TaxID: 1127514

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-120
PDB
Domain cluster: rep: IMGVR_UViG_3300025818_001172-3300025818-Ga0208542_10026784__D42-116
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05772.18 best NinB 83.5 1.60e-23 98.8% 60.3%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.83 77.0 6.30e-01 100.0% 57.4%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.62 28.0 2.80e-01 70.4% 38.6%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 43.0 2.90e-01 81.5% 88.5%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 28.0 3.24e-01 98.8% 63.2%
2kyzA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 4.21e-01 97.5% 88.1%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 41.0 4.42e-01 98.8% 92.6%
1w23A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 48.0 4.44e-01 100.0% 90.3%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.53 45.0 4.35e-01 96.3% 90.5%
2pmbA01 3.30.1850.10 Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like 0.53 46.0 4.23e-01 97.5% 93.5%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 41.0 4.05e-01 100.0% 80.0%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 38.0 3.63e-01 77.8% 97.0%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 37.0 3.85e-01 95.1% 81.6%
7k98E03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.52 39.0 4.11e-01 97.5% 97.1%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.51 36.0 3.84e-01 92.6% 85.7%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 42.0 3.81e-01 93.8% 99.1%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.51 28.0 2.74e-01 80.2% 45.6%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.50 36.0 3.76e-01 95.1% 81.8%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 43.0 3.13e-01 100.0% 96.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981752 829.1.1.1 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.90 85.0 7.08e-01 100.0% 65.4%
7698 829.1.1.1 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.83 77.0 6.30e-01 100.0% 57.4%
3963879 829.1.1.1 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.79 69.0 6.85e-01 100.0% 90.6%
5079949 829.1.1.3 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 0.69 60.0 5.74e-01 100.0% 83.2%
3275454 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.66 47.0 3.92e-01 76.5% 85.3%
3980273 829.1.1.3 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 0.64 56.0 4.90e-01 100.0% 65.6%
3929962 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.57 47.0 3.24e-01 100.0% 27.5%
3630540 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.57 46.0 3.19e-01 100.0% 26.4%
3685955 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.57 45.0 4.47e-01 100.0% 82.4%
3823903 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.56 41.0 3.69e-01 77.8% 79.1%
4946324 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 49.0 3.58e-01 100.0% 95.0%
3301434 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.54 41.0 4.10e-01 95.1% 77.6%
3943761 3227.1.1.1 ↗ alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.53 46.0 2.99e-01 98.8% 29.9%
3926804 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.52 44.0 4.28e-01 90.1% 97.8%
3593362 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.51 28.0 2.82e-01 75.3% 51.8%
4885808 7577.1.1.1 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.51 32.0 3.48e-01 98.8% 74.3%
3577107 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 32.0 3.81e-01 77.8% 98.1%
4928783 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.50 37.0 4.15e-01 95.1% 100.0%
3739576 327.11.2.27 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.50 33.0 3.84e-01 74.1% 100.0%