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NC_019527.1__YP_007007730.1__F394_gp41__00041
Bact-VirNC_019527.1__YP_007007730.1__F394_gp41__00041
Identity
- Accession:
- NC_019527 ↗
- Kingdom:
- phage
Quality
68.6
mean pLDDT
Taxonomy
TaxID: 1127514
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-116
Domain cluster:
rep: NC_025458.1__YP_009103265.1__S141_1__00001__D3-64
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ic8A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.79 | 59.0 | 5.58e-01 | 91.3% | 67.0% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.78 | 56.0 | 5.70e-01 | 91.3% | 77.9% |
| 4ybaA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.78 | 56.0 | 5.74e-01 | 88.7% | 77.9% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.78 | 58.0 | 5.96e-01 | 90.0% | 82.9% |
| 1b0nA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.77 | 51.0 | 4.72e-01 | 85.0% | 53.4% |
| 6rnzA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.76 | 51.0 | 5.55e-01 | 85.0% | 83.3% |
| 6b9sB02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.75 | 53.0 | 5.49e-01 | 90.0% | 80.8% |
| 2r1jL00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.75 | 49.0 | 5.34e-01 | 83.7% | 81.8% |
| 1y7yA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.74 | 55.0 | 5.84e-01 | 95.0% | 91.3% |
| 1r69A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.74 | 48.0 | 5.31e-01 | 83.7% | 84.1% |
| 4yg1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.73 | 52.0 | 5.43e-01 | 86.3% | 81.9% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.73 | 51.0 | 5.35e-01 | 86.3% | 81.7% |
| 4ghjB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.73 | 53.0 | 5.40e-01 | 95.0% | 80.3% |
| 2mqkA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.73 | 54.0 | 5.92e-01 | 88.7% | 96.9% |
| 3b7hA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.71 | 50.0 | 5.17e-01 | 90.0% | 78.9% |
| 3op9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 47.0 | 4.97e-01 | 90.0% | 83.8% |
| 3fymA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 50.0 | 5.03e-01 | 85.0% | 75.6% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 50.0 | 5.35e-01 | 92.5% | 100.0% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 53.0 | 4.35e-01 | 90.0% | 82.2% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.64 | 56.0 | 4.70e-01 | 100.0% | 62.9% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.64 | 38.0 | 3.97e-01 | 98.8% | 63.5% |
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.64 | 56.0 | 4.67e-01 | 100.0% | 62.9% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.63 | 55.0 | 5.07e-01 | 100.0% | 84.1% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.62 | 38.0 | 3.05e-01 | 92.5% | 29.9% |
| 7zhgO01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 48.0 | 5.18e-01 | 91.3% | 100.0% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 41.0 | 3.95e-01 | 71.2% | 67.8% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.59 | 40.0 | 3.73e-01 | 72.5% | 55.3% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 51.0 | 4.50e-01 | 98.8% | 84.7% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.58 | 50.0 | 4.15e-01 | 100.0% | 99.3% |
| 2y44A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.58 | 50.0 | 3.88e-01 | 97.5% | 90.2% |
| 2rt6A00 | 1.20.1270.340 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 48.0 | 4.54e-01 | 97.5% | 98.0% |
| 1ezwA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.56 | 46.0 | 3.03e-01 | 90.0% | 22.2% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.56 | 45.0 | 4.67e-01 | 96.2% | 96.1% |
| 3fy6A01 | 3.30.2210.10 | Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily | 0.55 | 38.0 | 3.56e-01 | 73.8% | 94.4% |
| 2lyiA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.55 | 46.0 | 3.92e-01 | 100.0% | 86.5% |
| 1zq9A02 | 1.10.8.480 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 43.0 | 4.03e-01 | 85.0% | 89.8% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 44.0 | 4.59e-01 | 92.5% | 100.0% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.54 | 45.0 | 4.02e-01 | 97.5% | 97.6% |
| 1tteA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.54 | 33.0 | 3.71e-01 | 93.8% | 84.2% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 38.0 | 4.00e-01 | 75.0% | 93.3% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 46.0 | 4.57e-01 | 98.8% | 95.2% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.53 | 40.0 | 3.83e-01 | 95.0% | 69.6% |
| 1h6gA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 44.0 | 3.87e-01 | 95.0% | 74.2% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 46.0 | 4.46e-01 | 100.0% | 100.0% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.52 | 45.0 | 4.52e-01 | 98.8% | 100.0% |
| 6jpaE00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.52 | 43.0 | 3.54e-01 | 100.0% | 67.5% |
| 1iqpA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.52 | 37.0 | 3.57e-01 | 91.3% | 66.0% |
| 3fedA03 | 1.20.930.40 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain | 0.51 | 44.0 | 3.64e-01 | 100.0% | 80.0% |
| 6t0bc02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.51 | 43.0 | 3.41e-01 | 100.0% | 56.0% |
| 3idwA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.51 | 35.0 | 3.77e-01 | 72.5% | 97.0% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 43.0 | 4.06e-01 | 100.0% | 91.3% |
| 1pujA02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.50 | 40.0 | 3.82e-01 | 87.5% | 77.4% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3980119 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.77 | 57.0 | 6.00e-01 | 95.0% | 88.6% |
| 3965368 | 101.1.4.20 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 | 0.77 | 57.0 | 5.75e-01 | 90.0% | 78.8% |
| 3281537 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.75 | 55.0 | 5.42e-01 | 95.0% | 72.9% |
| 3455096 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.74 | 64.0 | 4.57e-01 | 100.0% | 33.8% |
| 1149503 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.73 | 53.0 | 5.40e-01 | 95.0% | 80.3% |
| 3285035 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.72 | 56.0 | 5.40e-01 | 95.0% | 74.4% |
| 3285904 | 101.1.4.18 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 | 0.70 | 53.0 | 5.07e-01 | 95.0% | 69.5% |
| 3308724 | 3721.1.1.2 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › MAP65_ASE1 | 0.70 | 56.0 | 5.40e-01 | 100.0% | 76.7% |
| 3985846 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.70 | 53.0 | 5.13e-01 | 90.0% | 72.2% |
| 3952098 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.69 | 52.0 | 5.29e-01 | 95.0% | 81.2% |
| 3662968 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.68 | 48.0 | 5.33e-01 | 88.7% | 100.0% |
| 3925449 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.65 | 55.0 | 4.48e-01 | 95.0% | 80.0% |
| 3199926 | 611.2.1.0 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) | 0.63 | 55.0 | 4.80e-01 | 100.0% | 72.8% |
| 3903423 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.61 | 51.0 | 4.72e-01 | 93.8% | 76.2% |
| 3222373 | 605.4.1.18 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF29357 | 0.60 | 52.0 | 5.17e-01 | 98.8% | 96.5% |
| 3421092 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.60 | 51.0 | 4.56e-01 | 96.2% | 80.9% |
| 3587779 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.60 | 45.0 | 4.52e-01 | 95.0% | 80.0% |
| 3553221 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.60 | 53.0 | 4.66e-01 | 100.0% | 73.3% |
| 1874545 | 139.4.1.0 ↗ | few secondary structure elements › Multiheme cytochromes › Outer membrane cytochrome MtrF › Outer membrane cytochrome MtrF | 0.60 | 52.0 | 3.08e-01 | 100.0% | 13.2% |
| 4095048 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.60 | 53.0 | 4.66e-01 | 100.0% | 73.3% |
| 4352674 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.60 | 52.0 | 4.80e-01 | 98.8% | 82.9% |
| 4017007 | 5001.1.1.85 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin | 0.59 | 52.0 | 3.55e-01 | 100.0% | 91.5% |
| 4479999 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.59 | 50.0 | 4.57e-01 | 100.0% | 71.4% |
| 3976111 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.57 | 49.0 | 4.54e-01 | 100.0% | 75.0% |
| 3185507 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.57 | 46.0 | 4.67e-01 | 95.0% | 92.5% |
| 4600071 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.56 | 37.0 | 4.09e-01 | 73.8% | 90.0% |
| 4970556 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.56 | 44.0 | 4.47e-01 | 86.3% | 86.3% |
| 3987006 | 5086.1.1.93 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_EMRA | 0.55 | 38.0 | 3.27e-01 | 73.8% | 65.7% |
| 3610147 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.54 | 37.0 | 2.99e-01 | 71.2% | 86.0% |
| 3166260 | 1.1.7.123 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25885 | 0.54 | 37.0 | 3.19e-01 | 71.2% | 46.2% |
| 4825675 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.54 | 37.0 | 2.63e-01 | 72.5% | 33.3% |
| 3490234 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.52 | 45.0 | 3.99e-01 | 98.8% | 75.8% |
| 3975328 | 3718.1.1.1 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT | 0.52 | 34.0 | 3.37e-01 | 72.5% | 62.4% |
| 4010479 | 325.1.7.48 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25885 | 0.52 | 35.0 | 3.04e-01 | 71.2% | 52.3% |
| 3176799 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.51 | 44.0 | 3.44e-01 | 98.8% | 57.8% |
| 3895832 | 601.1.1.69 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CRIC_ras_sig | 0.51 | 43.0 | 3.87e-01 | 100.0% | 71.7% |
| 5070806 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.50 | 38.0 | 4.15e-01 | 97.5% | 100.0% |
| 3593719 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.50 | 42.0 | 3.34e-01 | 98.8% | 75.1% |