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NC_019529.1__YP_007007847.1__F404_gp024__00024

Bact-Vir

NC_019529.1__YP_007007847.1__F404_gp024__00024

Identity

Accession:
NC_019529 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Vipunavirus› Vibrio_phage_pVp-1

TaxID: 1150989

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-76
PDB
Domain cluster: rep: MW677525.1__QXN72396.1__RCSIMONEHASTD_67__00067__D2-76
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gteA04 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 3.58e-01 87.5% 98.0%
5joeA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.01e-01 100.0% 57.6%
1w2wB00 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.58 44.0 3.10e-01 81.2% 74.3%
3kglB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 2.76e-01 71.9% 59.6%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.89e-01 100.0% 57.6%
2qv7A02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 49.0 3.82e-01 100.0% 71.8%
2ofqA01 2.60.40.2500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 3.54e-01 96.9% 52.8%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.21e-01 70.3% 53.6%
4cvbA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.53 43.0 2.52e-01 90.6% 80.6%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 41.0 3.41e-01 85.9% 98.2%
7s5oA01 3.50.70.20 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › Cytochrome P460 0.52 36.0 2.90e-01 75.0% 70.7%
3s40A02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 41.0 3.45e-01 98.4% 77.6%
3kewA01 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 35.0 3.21e-01 71.9% 75.0%
3oq3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.08e-01 73.4% 74.0%
2o3oA02 3.30.310.160 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 0.50 37.0 3.08e-01 79.7% 55.0%
1ksiA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 3.22e-01 76.6% 85.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4486024 4004.1.1.10 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 0.57 47.0 3.55e-01 100.0% 84.3%
4947239 1.1.7.140 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 0.57 38.0 3.33e-01 70.3% 96.0%
4611577 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 46.0 4.26e-01 89.1% 93.8%
3501894 2.1.1.39 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.56 39.0 3.15e-01 73.4% 40.8%
1582440 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.54 36.0 3.01e-01 70.3% 47.8%
4125269 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.53 46.0 3.00e-01 96.9% 36.0%
4955607 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.52 35.0 2.49e-01 71.9% 36.3%