←Back to structures

NC_019538.1__YP_007010153.1__F485_gp168__00127

Bact-Vir

NC_019538.1__YP_007010153.1__F485_gp168__00127

Identity

Accession:
NC_019538 ↗
Kingdom:
phage

Quality

95.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_CC2

TaxID: 1204516

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-74
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zoiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 44.0 3.66e-01 70.1% 100.0%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.62 39.0 3.68e-01 71.6% 51.2%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 52.0 3.84e-01 94.0% 55.9%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.57e-01 88.1% 100.0%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 44.0 3.73e-01 80.6% 99.2%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 51.0 3.71e-01 94.0% 52.4%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.59 43.0 4.18e-01 79.1% 76.6%
4lg8A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 2.99e-01 85.1% 90.6%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 40.0 3.41e-01 73.1% 97.5%
4wjsA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.83e-01 85.1% 97.1%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 45.0 2.95e-01 86.6% 88.1%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.44e-01 80.6% 77.4%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 43.0 3.88e-01 82.1% 100.0%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.88e-01 85.1% 91.3%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 39.0 3.03e-01 70.1% 73.6%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 45.0 2.95e-01 88.1% 85.4%
2fhxA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 38.0 2.57e-01 70.1% 25.7%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.57 38.0 3.87e-01 73.1% 71.2%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 40.0 2.56e-01 76.1% 40.0%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 42.0 2.72e-01 82.1% 56.8%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 39.0 3.85e-01 76.1% 74.0%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.55 38.0 3.26e-01 71.6% 94.4%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.68e-01 82.1% 69.6%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.56e-01 79.1% 66.2%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 39.0 3.31e-01 79.1% 78.1%
1sqjB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.59e-01 77.6% 43.8%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.31e-01 86.6% 92.1%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 39.0 4.28e-01 80.6% 94.5%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.53e-01 77.6% 54.9%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 44.0 3.60e-01 97.0% 99.3%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.75e-01 85.1% 85.8%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.63e-01 82.1% 87.0%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 39.0 2.53e-01 79.1% 52.3%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.60e-01 76.1% 77.2%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.78e-01 88.1% 97.6%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.71e-01 85.1% 93.6%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.16e-01 73.1% 66.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 36.0 3.91e-01 73.1% 94.2%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 37.0 3.24e-01 77.6% 89.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 3.80e-01 79.1% 100.0%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.50e-01 79.1% 55.0%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.62e-01 88.1% 96.3%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.51 38.0 3.31e-01 85.1% 97.5%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 39.0 2.58e-01 83.6% 81.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 4.21e-01 97.0% 100.0%
3v9fA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.62e-01 88.1% 83.6%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 37.0 3.22e-01 80.6% 84.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3707784 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.79 41.0 5.43e-01 71.6% 97.1%
3473633 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.72 36.0 4.71e-01 71.6% 91.4%
3259112 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.68 35.0 4.53e-01 73.1% 94.3%
3263562 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 36.0 3.91e-01 73.1% 65.5%
3731518 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.64 44.0 4.32e-01 73.1% 69.3%
3576110 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 35.0 3.15e-01 79.1% 36.8%
4022249 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.63 48.0 2.95e-01 82.1% 92.8%
3409750 5.1.4.219 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.63 49.0 2.94e-01 83.6% 93.3%
3873021 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.62 48.0 2.90e-01 85.1% 86.7%
4561170 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.62 48.0 2.91e-01 83.6% 92.1%
3384630 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 41.0 2.80e-01 74.6% 18.0%
4013235 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.61 40.0 4.32e-01 79.1% 83.6%
3471663 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 44.0 2.77e-01 77.6% 30.8%
3624687 64.1.1.9 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.60 41.0 4.60e-01 73.1% 96.0%
3507504 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.60 37.0 4.24e-01 82.1% 91.1%
3715537 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.59 41.0 3.16e-01 80.6% 29.6%
3410783 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.59 37.0 4.37e-01 77.6% 95.6%
3464481 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.59 42.0 2.65e-01 76.1% 49.3%
3811138 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 41.0 2.76e-01 73.1% 53.9%
3178031 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.58 44.0 3.83e-01 79.1% 81.0%
3456149 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.58 44.0 2.84e-01 85.1% 82.7%
3401697 4357.1.1.4 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_3 0.58 40.0 3.75e-01 73.1% 74.1%
3462961 5.1.4.122 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.58 42.0 2.88e-01 79.1% 38.0%
3644147 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.57 38.0 4.28e-01 70.1% 92.0%
4279904 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.57 40.0 2.72e-01 74.6% 32.0%
3568187 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.57 30.0 3.86e-01 70.1% 97.1%
222939 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.57 40.0 4.27e-01 80.6% 87.5%
3552883 64.1.1.9 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.57 41.0 4.03e-01 77.6% 72.0%
3419181 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.56 39.0 2.64e-01 74.6% 70.8%
3373479 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 43.0 2.88e-01 83.6% 95.6%
3805053 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.56 39.0 2.60e-01 74.6% 36.3%
3324317 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.56 43.0 2.75e-01 83.6% 96.4%
3806989 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.56 41.0 2.69e-01 77.6% 74.0%
3420106 5.1.2.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.56 40.0 3.39e-01 76.1% 64.0%
3940294 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 43.0 2.57e-01 86.6% 41.4%
3788776 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.55 42.0 2.69e-01 82.1% 89.6%
None — 0.55 43.0 2.81e-01 86.6% 81.0%
4024970 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 37.0 2.30e-01 70.1% 43.0%
3994906 5.1.3.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.55 40.0 2.61e-01 77.6% 61.8%
3338126 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 39.0 2.65e-01 74.6% 46.7%
3810782 5.1.5.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 0.55 43.0 2.82e-01 89.6% 30.6%
3995338 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 44.0 3.42e-01 91.0% 65.2%
3818556 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 43.0 2.77e-01 86.6% 79.7%
3936845 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 44.0 3.41e-01 91.0% 65.2%
3805925 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 43.0 2.80e-01 88.1% 85.2%
3338669 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.54 36.0 3.90e-01 82.1% 83.6%
3832622 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 43.0 2.79e-01 88.1% 96.5%
3806681 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.54 39.0 2.65e-01 80.6% 68.4%
3439915 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 42.0 2.77e-01 86.6% 73.2%
3451989 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 41.0 2.69e-01 85.1% 97.8%
3874056 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.53 38.0 4.13e-01 77.6% 94.5%
4029129 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 38.0 2.43e-01 76.1% 41.2%
4028139 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.52 36.0 3.91e-01 80.6% 87.3%
3820157 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.52 39.0 2.88e-01 82.1% 75.1%
3912572 5.1.5.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N,DPPIV_rep 0.51 36.0 2.24e-01 76.1% 22.3%
3788029 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.51 36.0 2.58e-01 77.6% 81.7%
3468658 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 40.0 2.64e-01 86.6% 96.0%
3739945 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.51 39.0 2.54e-01 88.1% 90.1%
4026161 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.50 40.0 3.40e-01 92.5% 82.4%