←Back to structures
NC_019541.1__YP_007010593.1__BPABA456_00120__00012
Bact-VirNC_019541.1__YP_007010593.1__BPABA456_00120__00012
Identity
- Accession:
- NC_019541 ↗
- Kingdom:
- phage
Quality
85.9
mean pLDDT
Taxonomy
TaxID: 1221835
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-78
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.87 | 78.0 | 5.94e-01 | 100.0% | 45.2% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 71.0 | 5.53e-01 | 88.0% | 44.9% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.84 | 59.0 | 6.14e-01 | 77.3% | 79.4% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.83 | 63.0 | 6.34e-01 | 86.7% | 81.1% |
| 4dylA02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.82 | 67.0 | 6.24e-01 | 94.7% | 71.3% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.81 | 67.0 | 6.48e-01 | 89.3% | 81.2% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.80 | 62.0 | 6.17e-01 | 81.3% | 80.5% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 60.0 | 6.16e-01 | 78.7% | 83.3% |
| 7dluA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 60.0 | 5.34e-01 | 80.0% | 60.0% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 73.0 | 5.05e-01 | 100.0% | 59.3% |
| 4mycA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.79 | 72.0 | 4.63e-01 | 100.0% | 23.5% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 63.0 | 5.66e-01 | 86.7% | 64.7% |
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.78 | 71.0 | 4.77e-01 | 100.0% | 30.1% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.77 | 52.0 | 5.61e-01 | 76.0% | 81.2% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.77 | 57.0 | 4.03e-01 | 78.7% | 27.0% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 55.0 | 5.59e-01 | 77.3% | 76.7% |
| 2d1lA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.76 | 69.0 | 4.74e-01 | 100.0% | 31.7% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.76 | 61.0 | 5.49e-01 | 97.3% | 63.1% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.75 | 60.0 | 5.24e-01 | 98.7% | 58.0% |
| 3ns4A00 | 1.10.357.110 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus | 0.74 | 52.0 | 3.78e-01 | 73.3% | 28.3% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 64.0 | 5.01e-01 | 100.0% | 47.1% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 54.0 | 4.94e-01 | 81.3% | 79.2% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.69 | 48.0 | 5.12e-01 | 76.0% | 82.1% |
| 4q20A01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.68 | 56.0 | 5.50e-01 | 90.7% | 84.1% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 51.0 | 5.42e-01 | 82.7% | 93.8% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.68 | 49.0 | 5.05e-01 | 77.3% | 86.1% |
| 3o6xA02 | 1.20.120.1560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.68 | 62.0 | 4.89e-01 | 100.0% | 93.9% |
| 3fd0A01 | 3.90.1150.60 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain | 0.67 | 50.0 | 3.62e-01 | 80.0% | 30.6% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.65 | 45.0 | 4.30e-01 | 72.0% | 63.2% |
| 3fedA03 | 1.20.930.40 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain | 0.64 | 48.0 | 3.82e-01 | 81.3% | 80.0% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 47.0 | 4.74e-01 | 82.7% | 79.5% |
| 6okdA03 | 1.20.930.40 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain | 0.63 | 48.0 | 3.93e-01 | 81.3% | 82.0% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.62 | 44.0 | 4.06e-01 | 74.7% | 58.3% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.61 | 43.0 | 4.29e-01 | 73.3% | 77.6% |
| 1cpcA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.57 | 39.0 | 3.05e-01 | 72.0% | 32.7% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 39.0 | 3.67e-01 | 81.3% | 64.4% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3928718 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.93 | 66.0 | 5.17e-01 | 73.3% | 39.3% |
| 4025636 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.92 | 65.0 | 4.84e-01 | 72.0% | 34.2% |
| None | — | 0.90 | 84.0 | 5.57e-01 | 100.0% | 29.8% | |
| 4001186 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.84 | 78.0 | 5.64e-01 | 100.0% | 39.5% |
| 5018636 | 605.1.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_2 | 0.82 | 62.0 | 6.43e-01 | 84.0% | 85.7% |
| 3564399 | 3755.3.1.282 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tmemb_cc2 | 0.82 | 61.0 | 5.22e-01 | 100.0% | 51.3% |
| 3634896 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.80 | 73.0 | 6.29e-01 | 100.0% | 65.2% |
| 3931714 | 3826.1.1.46 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › L27_1 | 0.80 | 62.0 | 5.96e-01 | 84.0% | 72.9% |
| 3375617 | 192.5.1.30 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF641 | 0.80 | 54.0 | 5.35e-01 | 78.7% | 66.3% |
| 4028552 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.80 | 73.0 | 5.00e-01 | 100.0% | 33.9% |
| 3367913 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.79 | 68.0 | 5.39e-01 | 92.0% | 49.3% |
| 4010416 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.77 | 69.0 | 5.82e-01 | 100.0% | 60.8% |
| 5039854 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 59.0 | 5.95e-01 | 81.3% | 88.0% |
| 3350539 | 192.23.1.6 ↗ | alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Med10 | 0.77 | 56.0 | 5.36e-01 | 80.0% | 67.1% |
| 3906810 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.76 | 68.0 | 5.55e-01 | 100.0% | 58.6% |
| 3221299 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.76 | 63.0 | 5.21e-01 | 92.0% | 50.4% |
| 3916497 | 632.8.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Rab_eff_C | 0.76 | 66.0 | 5.48e-01 | 93.3% | 56.8% |
| 3839108 | 310.2.1.65 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › MotA_ExbB | 0.76 | 61.0 | 5.20e-01 | 97.3% | 53.6% |
| 3452001 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.76 | 50.0 | 3.71e-01 | 73.3% | 27.6% |
| 3594486 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 65.0 | 5.52e-01 | 96.0% | 59.2% |
| 4033954 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.75 | 62.0 | 5.66e-01 | 90.7% | 69.0% |
| 3937465 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 58.0 | 4.12e-01 | 86.7% | 28.8% |
| 3695585 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 67.0 | 4.85e-01 | 100.0% | 40.5% |
| 3268975 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.74 | 61.0 | 4.82e-01 | 94.7% | 44.7% |
| 4946656 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.74 | 60.0 | 5.01e-01 | 85.3% | 64.2% |
| 5028533 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.73 | 66.0 | 5.48e-01 | 100.0% | 57.7% |
| 4156473 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.73 | 56.0 | 5.18e-01 | 89.3% | 64.2% |
| 3262083 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.73 | 50.0 | 4.46e-01 | 82.7% | 50.5% |
| 4943532 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 54.0 | 5.59e-01 | 81.3% | 82.9% |
| 4370184 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.73 | 63.0 | 4.76e-01 | 100.0% | 39.7% |
| 3745853 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.73 | 65.0 | 4.89e-01 | 100.0% | 41.1% |
| 3801787 | 604.5.1.39 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF26581 | 0.72 | 59.0 | 4.82e-01 | 100.0% | 48.9% |
| 3582858 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.72 | 62.0 | 4.76e-01 | 93.3% | 44.8% |
| 4572974 | 3922.1.1.79 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › SAP130_C | 0.72 | 65.0 | 5.63e-01 | 100.0% | 65.2% |
| 3626248 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.71 | 63.0 | 4.51e-01 | 100.0% | 35.5% |
| 3484074 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.71 | 59.0 | 4.83e-01 | 92.0% | 62.9% |
| 4237962 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.70 | 62.0 | 3.83e-01 | 98.7% | 60.4% |
| 3494783 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.69 | 58.0 | 4.67e-01 | 90.7% | 82.9% |
| 3485696 | 192.29.1.139 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TRAM_LAG1_CLN8 | 0.67 | 50.0 | 4.16e-01 | 86.7% | 45.4% |
| 3488979 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.65 | 53.0 | 4.46e-01 | 88.0% | 72.0% |
| 4575614 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.64 | 56.0 | 3.92e-01 | 100.0% | 33.5% |
| 3477749 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.62 | 43.0 | 4.43e-01 | 73.3% | 80.0% |
| 4978597 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.56 | 45.0 | 3.51e-01 | 93.3% | 80.5% |