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NC_019541.1__YP_007010626.1__BPABA456_00450__00045

Bact-Vir

NC_019541.1__YP_007010626.1__BPABA456_00450__00045

Identity

Accession:
NC_019541 ↗
Kingdom:
phage

Quality

95.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vieuvirus› Acinetobacter_phage_YMC/09/02/B1251

TaxID: 1221835

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-49_104-115
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.86 65.0 5.01e-01 78.7% 44.3%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 58.0 5.12e-01 83.6% 79.1%
1vs5O00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.74 54.0 4.73e-01 77.0% 56.8%
2ys8A00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.72 54.0 4.71e-01 80.3% 55.6%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.71 52.0 4.38e-01 78.7% 94.3%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.71 52.0 4.75e-01 78.7% 63.0%
3pqaB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.69 51.0 3.30e-01 78.7% 20.2%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 51.0 3.55e-01 80.3% 32.7%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.68 51.0 4.29e-01 80.3% 79.0%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.67 57.0 4.20e-01 96.7% 46.7%
1y1xB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 42.0 3.02e-01 73.8% 26.4%
2wauA02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 51.0 4.09e-01 98.4% 86.9%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 49.0 3.83e-01 98.4% 57.4%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 40.0 3.42e-01 73.8% 90.9%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 48.0 3.92e-01 100.0% 65.3%
1q2lA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 46.0 3.13e-01 90.2% 62.7%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 47.0 4.12e-01 100.0% 88.8%
7btoA01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.55 47.0 3.59e-01 100.0% 43.1%
5u56A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 46.0 3.88e-01 100.0% 72.3%
4y5jA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 48.0 3.27e-01 100.0% 30.8%
1adeA02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.53 46.0 3.96e-01 100.0% 60.0%
1xb4B01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.53 47.0 3.98e-01 100.0% 67.3%
2n04A00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.53 46.0 3.87e-01 98.4% 59.0%
2d6yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 44.0 3.12e-01 91.8% 47.8%
3vldA01 1.25.10.50 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › 0.52 45.0 2.93e-01 100.0% 28.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389960 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.77 58.0 5.16e-01 80.3% 71.8%
3442456 109.4.1.110 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mad3_BUB1_I 0.76 54.0 4.07e-01 75.4% 31.7%
2875501 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.75 61.0 4.71e-01 88.5% 66.2%
3444036 601.1.1.91 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 0.75 67.0 5.29e-01 100.0% 81.6%
4538289 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.68 61.0 4.67e-01 98.4% 70.4%
3640092 109.4.1.63 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAP42 0.67 61.0 4.02e-01 100.0% 55.3%
3497418 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 56.0 4.74e-01 98.4% 76.0%
3171100 603.1.1.100 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.63 54.0 4.56e-01 95.1% 87.0%
4992707 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 56.0 4.28e-01 100.0% 75.7%
5052262 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 47.0 4.41e-01 82.0% 94.7%
4002857 109.4.1.1438 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_16, TPR_19 0.61 54.0 3.35e-01 100.0% 21.2%
4182542 4207.1.2.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.61 47.0 3.81e-01 83.6% 64.3%
3444977 109.4.1.233 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS53_C 0.60 51.0 3.27e-01 98.4% 34.9%
60072 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 3.97e-01 100.0% 62.4%
3955270 191.1.1.24 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_34 0.55 46.0 3.48e-01 100.0% 58.2%
4313597 309.1.1.9 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PQQ_syn_pqqF_N_2 0.50 45.0 3.11e-01 98.4% 61.0%
D2 medium residues 50-103_116-128
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.75 52.0 5.02e-01 73.1% 89.6%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.75 58.0 4.98e-01 82.1% 69.9%
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.71 58.0 4.42e-01 91.0% 79.0%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.67 49.0 4.10e-01 79.1% 76.9%
6gwuD00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.65 46.0 3.25e-01 74.6% 31.7%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.63 52.0 3.20e-01 89.6% 53.7%
2ebfX02 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.63 54.0 4.22e-01 95.5% 69.9%
4o1jA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.62 44.0 3.18e-01 74.6% 32.0%
6yiiA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.62 51.0 3.61e-01 91.0% 71.3%
3mnlB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 53.0 3.85e-01 95.5% 68.7%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.61 50.0 4.00e-01 91.0% 65.2%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.60 51.0 4.82e-01 97.0% 82.9%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.58 42.0 3.40e-01 77.6% 46.3%
7p5hB03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.57 45.0 4.17e-01 89.6% 66.3%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.54 42.0 3.66e-01 92.5% 54.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3597736 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 56.0 5.17e-01 80.6% 83.5%
4977333 4333.1.1.2 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C 0.72 65.0 4.38e-01 100.0% 88.2%
3181987 192.8.1.311 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › HAM1_N 0.70 58.0 4.97e-01 89.6% 90.5%
3921143 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 59.0 4.50e-01 100.0% 97.3%
3231673 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 5.09e-01 88.1% 86.7%
3840036 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.64 53.0 3.62e-01 91.0% 82.1%
3324540 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.64 55.0 4.44e-01 98.5% 77.0%
4290529 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.62 54.0 4.49e-01 95.5% 56.4%
4080125 616.1.1.45 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › MIS13 0.62 55.0 5.18e-01 98.5% 92.5%
4933045 601.7.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1 0.62 56.0 5.15e-01 100.0% 85.9%
3512236 219.1.1.48 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C65 0.62 49.0 3.78e-01 89.6% 62.5%
3471803 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.62 54.0 4.47e-01 100.0% 89.6%
3885048 3998.1.1.1 ↗ alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.59 45.0 4.33e-01 80.6% 82.7%
4663861 5069.1.3.78 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › MIS13 0.59 49.0 4.71e-01 94.0% 86.3%
3592519 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.57 46.0 3.36e-01 89.6% 87.9%
3924466 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 42.0 3.47e-01 86.6% 82.4%