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NC_019545.1__YP_007010993.1__F482_gp23__00023
Bact-VirNC_019545.1__YP_007010993.1__F482_gp23__00023
Identity
- Accession:
- NC_019545 ↗
- Kingdom:
- phage
Quality
91.6
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-87
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.76 | 39.0 | 3.76e-01 | 82.9% | 45.2% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.69 | 41.0 | 3.81e-01 | 100.0% | 47.4% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 48.0 | 3.51e-01 | 93.4% | 82.5% |
| 5z9iA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 48.0 | 3.07e-01 | 93.4% | 67.1% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 45.0 | 2.94e-01 | 86.8% | 99.7% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.56 | 41.0 | 3.56e-01 | 77.6% | 50.4% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.56 | 44.0 | 4.20e-01 | 84.2% | 73.9% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 36.0 | 2.69e-01 | 100.0% | 25.9% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 43.0 | 3.12e-01 | 85.5% | 63.6% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.54 | 39.0 | 3.19e-01 | 75.0% | 53.7% |
| 2g47A03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 45.0 | 3.22e-01 | 93.4% | 53.7% |
| 6zxfz01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 39.0 | 3.36e-01 | 89.5% | 48.0% |
| 4xaaA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.53 | 38.0 | 2.77e-01 | 77.6% | 26.2% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.53 | 28.0 | 3.09e-01 | 77.6% | 63.2% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.53 | 37.0 | 3.66e-01 | 76.3% | 67.5% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 4.03e-01 | 94.7% | 90.3% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 44.0 | 3.28e-01 | 94.7% | 92.8% |
| 1wp1B01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.52 | 43.0 | 2.85e-01 | 96.1% | 93.3% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 37.0 | 4.07e-01 | 86.8% | 94.9% |
| 2lu1A00 | 3.30.70.2370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.82e-01 | 84.2% | 82.0% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.51 | 38.0 | 2.80e-01 | 78.9% | 56.0% |
| 6l3tA01 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.51 | 39.0 | 3.00e-01 | 85.5% | 52.8% |
| 1ghhA00 | 3.30.910.10 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like | 0.51 | 40.0 | 3.92e-01 | 84.2% | 81.5% |
| 4wbtA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 39.0 | 3.15e-01 | 81.6% | 56.2% |
| 5a4aA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 44.0 | 3.30e-01 | 100.0% | 43.8% |
| 2cjwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 35.0 | 2.70e-01 | 72.4% | 56.7% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.50 | 40.0 | 3.57e-01 | 85.5% | 69.7% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 34.0 | 3.10e-01 | 71.1% | 92.5% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.50 | 38.0 | 3.69e-01 | 82.9% | 76.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949260 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.91 | 86.0 | 7.45e-01 | 100.0% | 72.7% |
| 4950395 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.66 | 50.0 | 4.38e-01 | 81.6% | 55.5% |
| 4408503 | 192.2.1.43 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › TraD_N | 0.65 | 50.0 | 4.15e-01 | 84.2% | 77.0% |
| 3723257 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.62 | 45.0 | 4.42e-01 | 84.2% | 70.6% |
| 3553577 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.59 | 45.0 | 3.39e-01 | 80.3% | 37.1% |
| 3702168 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.58 | 46.0 | 2.63e-01 | 85.5% | 46.6% |
| 3802552 | 601.1.1.91 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 | 0.56 | 36.0 | 2.90e-01 | 71.1% | 30.3% |
| 4991231 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.56 | 47.0 | 2.86e-01 | 90.8% | 84.4% |
| 5043879 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.56 | 42.0 | 3.98e-01 | 80.3% | 75.6% |
| 4588825 | 589.1.1.20 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › TraD_N | 0.56 | 43.0 | 3.62e-01 | 84.2% | 78.5% |
| 3942067 | 4120.1.1.44 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TraD_N | 0.55 | 47.0 | 4.22e-01 | 100.0% | 95.5% |
| 4027654 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 40.0 | 4.12e-01 | 78.9% | 89.3% |
| 3512585 | 5010.1.1.5 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › TraD_N | 0.54 | 41.0 | 3.65e-01 | 84.2% | 88.7% |
| 4112182 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 36.0 | 3.16e-01 | 71.1% | 82.2% |
| 3550136 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 36.0 | 3.19e-01 | 71.1% | 81.7% |
| 3488760 | 3937.1.1.0 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 | 0.53 | 40.0 | 2.76e-01 | 82.9% | 41.3% |
| 4983119 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.53 | 40.0 | 3.90e-01 | 82.9% | 78.7% |
| 4972531 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.53 | 40.0 | 4.02e-01 | 82.9% | 88.7% |
| 3415982 | 601.16.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase | 0.53 | 37.0 | 2.94e-01 | 72.4% | 52.4% |
| 5010022 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.53 | 40.0 | 3.91e-01 | 82.9% | 84.7% |
| 3579472 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 37.0 | 3.04e-01 | 72.4% | 64.6% |
| 5060556 | 3016.1.1.5 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SHMT | 0.53 | 44.0 | 3.56e-01 | 100.0% | 88.2% |
| 3898373 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.52 | 43.0 | 2.97e-01 | 92.1% | 45.5% |
| 4948386 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.52 | 39.0 | 3.90e-01 | 81.6% | 87.5% |
| 1000517 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 37.0 | 3.34e-01 | 72.4% | 85.1% |
| 5000786 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.52 | 39.0 | 3.92e-01 | 81.6% | 86.3% |
| 4017372 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 36.0 | 3.13e-01 | 72.4% | 74.8% |
| 5029669 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.51 | 36.0 | 3.08e-01 | 72.4% | 82.5% |
| 5036264 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.51 | 39.0 | 3.55e-01 | 82.9% | 72.4% |
| 4987052 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.51 | 40.0 | 4.03e-01 | 84.2% | 86.7% |
| 3805761 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.51 | 34.0 | 3.44e-01 | 97.4% | 69.3% |
| 4973579 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 42.0 | 3.27e-01 | 97.4% | 93.5% |
| 3208120 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.51 | 39.0 | 3.05e-01 | 81.6% | 81.9% |
| 5044199 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.51 | 45.0 | 3.10e-01 | 100.0% | 60.6% |