←Back to structures
NC_019550.1__YP_007011128.1__F489_gp33__00033
Bact-VirNC_019550.1__YP_007011128.1__F489_gp33__00033
Identity
- Accession:
- NC_019550 ↗
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-106
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gc5A02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.68 | 60.0 | 5.26e-01 | 98.4% | 78.9% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 43.0 | 4.07e-01 | 78.7% | 54.2% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.68 | 59.0 | 5.16e-01 | 100.0% | 65.3% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.68 | 41.0 | 4.03e-01 | 78.7% | 55.9% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 40.0 | 2.60e-01 | 93.4% | 13.5% |
| 6ifsB02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.67 | 58.0 | 5.51e-01 | 96.7% | 98.6% |
| 3di5A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.66 | 56.0 | 4.32e-01 | 100.0% | 85.9% |
| 1qamA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.64 | 57.0 | 5.27e-01 | 100.0% | 92.3% |
| 2jnsA01 | 1.20.1270.220 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 55.0 | 5.07e-01 | 100.0% | 84.0% |
| 3w0fA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 55.0 | 4.24e-01 | 98.4% | 49.3% |
| 1tdzA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 55.0 | 4.31e-01 | 100.0% | 50.0% |
| 1k82A02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 54.0 | 4.35e-01 | 98.4% | 55.3% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 52.0 | 4.97e-01 | 95.1% | 83.1% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 53.0 | 4.52e-01 | 100.0% | 69.0% |
| 2hs5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 3.88e-01 | 82.0% | 62.7% |
| 3rgcA01 | 1.10.4030.10 | Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain | 0.60 | 40.0 | 2.95e-01 | 91.8% | 25.3% |
| 3rssA02 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.59 | 49.0 | 3.22e-01 | 95.1% | 85.2% |
| 4c2uA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 43.0 | 4.00e-01 | 80.3% | 88.9% |
| 4ri6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 38.0 | 3.07e-01 | 72.1% | 33.6% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.58 | 41.0 | 3.88e-01 | 80.3% | 61.6% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.58 | 50.0 | 4.80e-01 | 100.0% | 90.3% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.57 | 42.0 | 3.51e-01 | 78.7% | 46.1% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 43.0 | 4.16e-01 | 80.3% | 85.1% |
| 1oxjA02 | 1.25.40.170 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain | 0.56 | 40.0 | 3.31e-01 | 75.4% | 49.5% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 52.0 | 4.41e-01 | 100.0% | 81.7% |
| 3nynA03 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.55 | 38.0 | 3.49e-01 | 70.5% | 59.3% |
| 2p9xA00 | 1.10.1200.200 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 | 0.55 | 46.0 | 4.07e-01 | 100.0% | 65.3% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.54 | 38.0 | 3.46e-01 | 78.7% | 55.6% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.54 | 43.0 | 3.22e-01 | 90.2% | 67.1% |
| 2pbeA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 45.0 | 3.69e-01 | 100.0% | 50.8% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.53 | 46.0 | 4.47e-01 | 100.0% | 89.6% |
| 6ks6a01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.52 | 45.0 | 2.94e-01 | 100.0% | 32.5% |
| 3f7cA00 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.51 | 42.0 | 3.12e-01 | 100.0% | 60.3% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 47.0 | 3.92e-01 | 100.0% | 95.1% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 40.0 | 3.16e-01 | 86.9% | 45.1% |
| 3oqvA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.51 | 40.0 | 2.83e-01 | 90.2% | 93.8% |
| 2qbyB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.81e-01 | 83.6% | 66.3% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4993069 | 632.12.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 | 0.71 | 60.0 | 6.00e-01 | 100.0% | 90.5% |
| 4114937 | 101.1.4.5 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N | 0.71 | 62.0 | 5.08e-01 | 100.0% | 54.8% |
| 3402309 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.69 | 61.0 | 5.46e-01 | 98.4% | 82.4% |
| 3994879 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.69 | 61.0 | 5.22e-01 | 98.4% | 71.6% |
| 3237353 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.68 | 60.0 | 5.09e-01 | 98.4% | 71.0% |
| 3555324 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.68 | 59.0 | 4.86e-01 | 98.4% | 64.5% |
| 5044957 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.67 | 63.0 | 5.97e-01 | 100.0% | 87.1% |
| 3671314 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.65 | 56.0 | 3.73e-01 | 98.4% | 32.7% |
| 3685718 | 4120.1.1.1 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP | 0.63 | 54.0 | 4.85e-01 | 100.0% | 75.6% |
| 3831458 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.63 | 54.0 | 4.32e-01 | 98.4% | 54.4% |
| 5062887 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.62 | 55.0 | 4.47e-01 | 98.4% | 53.9% |
| 4404318 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.61 | 50.0 | 4.65e-01 | 91.8% | 78.8% |
| 3489683 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.61 | 39.0 | 3.67e-01 | 90.2% | 52.0% |
| 311021 | 101.22.1.1 ↗ | alpha arrays › HTH › IscX-like (DEPRECATED) › IscX-like (DEPRECATED) › Fe-S_assembly (DEPRECATED) | 0.60 | 38.0 | 3.72e-01 | 98.4% | 59.1% |
| 3944357 | 101.1.1.394 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4158 | 0.60 | 41.0 | 3.74e-01 | 100.0% | 51.8% |
| 3952322 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.60 | 50.0 | 4.30e-01 | 98.4% | 58.1% |
| 5060248 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.60 | 51.0 | 4.95e-01 | 96.7% | 88.6% |
| 3495314 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.59 | 40.0 | 3.68e-01 | 75.4% | 53.8% |
| 5013034 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.59 | 44.0 | 3.87e-01 | 80.3% | 81.1% |
| 3721853 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.59 | 35.0 | 3.42e-01 | 72.1% | 51.4% |
| 3466891 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.59 | 51.0 | 4.02e-01 | 100.0% | 87.4% |
| 3955763 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.58 | 42.0 | 3.69e-01 | 78.7% | 51.6% |
| 4020126 | 3277.2.1.0 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 | 0.58 | 39.0 | 3.09e-01 | 72.1% | 38.6% |
| 3339479 | 4310.1.1.3 ↗ | alpha arrays › Dcp2 box A domain › Dcp2 box A domain › Dcp2 box A domain › DUF7913 | 0.57 | 40.0 | 3.09e-01 | 73.8% | 34.6% |
| 3956221 | 4052.1.1.0 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like | 0.56 | 41.0 | 2.80e-01 | 78.7% | 21.3% |
| 3288678 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.56 | 38.0 | 3.35e-01 | 72.1% | 52.0% |
| 3273401 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 40.0 | 2.76e-01 | 78.7% | 22.4% |
| 3739307 | 604.12.1.56 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ASTER | 0.55 | 38.0 | 3.62e-01 | 72.1% | 61.4% |
| 3596386 | 109.4.1.1774 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CFAP46_N | 0.55 | 39.0 | 2.90e-01 | 73.8% | 32.3% |
| 3953392 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.55 | 39.0 | 3.47e-01 | 78.7% | 51.6% |
| 3707393 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.54 | 40.0 | 3.08e-01 | 88.5% | 33.8% |
| 3807848 | 103.1.1.34 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical | 0.54 | 40.0 | 3.63e-01 | 95.1% | 57.6% |
| 3285386 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.54 | 44.0 | 2.79e-01 | 95.1% | 17.7% |
| 3233589 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.54 | 38.0 | 3.54e-01 | 73.8% | 84.0% |
| 3627133 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.53 | 45.0 | 3.28e-01 | 98.4% | 38.4% |
| 4969424 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.53 | 38.0 | 3.56e-01 | 75.4% | 68.0% |
| 4889133 | 1030.1.1.1 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A | 0.51 | 43.0 | 3.46e-01 | 98.4% | 66.2% |
| 4942625 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.51 | 35.0 | 3.26e-01 | 83.6% | 56.2% |