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NC_019704.1__YP_007111382.1__F852_gp09__00009
Bact-VirNC_019704.1__YP_007111382.1__F852_gp09__00009
Identity
- Accession:
- NC_019704 ↗
- Kingdom:
- phage
Quality
77.6
mean pLDDT
Cluster
View cluster (43 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-107
Domain cluster:
rep: OP810509.1__WAK43900.1__IAPFLPAM_00040__00040__D27-100
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05354.18 best | Phage_attach | 49.1 | 1.00e-12 | 96.3% | 62.6% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.79 | 57.0 | 6.42e-01 | 100.0% | 98.4% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.74 | 60.0 | 5.77e-01 | 96.3% | 76.1% |
| 2w5eA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 50.0 | 5.50e-01 | 98.8% | 90.8% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 38.0 | 4.26e-01 | 95.1% | 64.6% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.71 | 48.0 | 4.97e-01 | 85.4% | 74.7% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.71 | 50.0 | 5.14e-01 | 84.1% | 75.9% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.68 | 61.0 | 5.73e-01 | 96.3% | 99.0% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.68 | 63.0 | 5.55e-01 | 100.0% | 91.3% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.68 | 61.0 | 4.99e-01 | 100.0% | 84.6% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.68 | 59.0 | 5.99e-01 | 98.8% | 98.7% |
| 2p04A00 | 3.30.450.260 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain | 0.67 | 43.0 | 3.95e-01 | 100.0% | 50.5% |
| 1yy3A02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.66 | 49.0 | 4.68e-01 | 100.0% | 66.7% |
| 2e8yA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 45.0 | 4.19e-01 | 84.1% | 57.4% |
| 2kcaA00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.65 | 58.0 | 5.28e-01 | 100.0% | 88.1% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 50.0 | 4.97e-01 | 95.1% | 79.3% |
| 2bhgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 52.0 | 4.89e-01 | 100.0% | 72.5% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 46.0 | 4.39e-01 | 92.7% | 64.3% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 53.0 | 5.04e-01 | 100.0% | 76.5% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.62 | 46.0 | 4.65e-01 | 85.4% | 77.1% |
| 3szeA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 55.0 | 3.72e-01 | 100.0% | 32.5% |
| 1wxrA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 54.0 | 3.81e-01 | 100.0% | 41.2% |
| 1zyoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 48.0 | 4.78e-01 | 100.0% | 86.7% |
| 2olgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 53.0 | 4.78e-01 | 100.0% | 86.1% |
| 4dqlB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 45.0 | 4.17e-01 | 100.0% | 62.4% |
| 1havB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 53.0 | 4.89e-01 | 100.0% | 85.4% |
| 2rc5B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 47.0 | 4.09e-01 | 93.9% | 83.6% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 35.0 | 3.08e-01 | 100.0% | 38.6% |
| 1vq8B02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 45.0 | 3.83e-01 | 87.8% | 73.0% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.56 | 47.0 | 4.12e-01 | 93.9% | 71.2% |
| 2b9kA00 | 2.20.20.70 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.55 | 31.0 | 3.66e-01 | 76.8% | 91.5% |
| 1o70A01 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.54 | 42.0 | 3.53e-01 | 82.9% | 75.0% |
| 4eclA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.54 | 48.0 | 3.96e-01 | 100.0% | 61.6% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 47.0 | 4.25e-01 | 96.3% | 78.0% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.52 | 44.0 | 4.11e-01 | 96.3% | 76.0% |
| 4m9pA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.63e-01 | 86.6% | 66.0% |
| 2p13A00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 37.0 | 3.72e-01 | 80.5% | 74.1% |
| 2ewhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.50 | 37.0 | 3.72e-01 | 89.0% | 76.5% |
| 2ej9A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 46.0 | 3.47e-01 | 100.0% | 66.5% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.50 | 43.0 | 3.85e-01 | 100.0% | 74.6% |
| 3c8cB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 37.0 | 3.28e-01 | 80.5% | 64.6% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4500949 | 1.1.5.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF26339 | 0.76 | 60.0 | 6.25e-01 | 100.0% | 90.7% |
| 3058418 | 1.1.13.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach | 0.75 | 70.0 | 6.43e-01 | 100.0% | 80.4% |
| 3975275 | 1.1.13.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 | 0.75 | 60.0 | 5.72e-01 | 100.0% | 73.7% |
| 4405204 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.74 | 55.0 | 5.56e-01 | 100.0% | 80.0% |
| 3447802 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 57.0 | 5.52e-01 | 100.0% | 74.4% |
| 3949305 | 1.1.13.54 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L | 0.73 | 67.0 | 5.48e-01 | 100.0% | 92.4% |
| 3509725 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.73 | 59.0 | 4.15e-01 | 100.0% | 29.6% |
| 3504737 | 1.1.13.54 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L | 0.72 | 66.0 | 5.48e-01 | 100.0% | 94.3% |
| 3788348 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.70 | 62.0 | 5.47e-01 | 93.9% | 78.3% |
| 4487049 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 50.0 | 3.90e-01 | 100.0% | 34.9% |
| 4033712 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 63.0 | 6.26e-01 | 97.6% | 100.0% |
| 4954563 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 64.0 | 6.40e-01 | 100.0% | 98.8% |
| 4092486 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.69 | 49.0 | 3.82e-01 | 100.0% | 33.9% |
| 4883825 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.69 | 63.0 | 6.06e-01 | 100.0% | 94.6% |
| 4395103 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 50.0 | 4.84e-01 | 95.1% | 68.9% |
| 4031786 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.69 | 61.0 | 6.07e-01 | 97.6% | 100.0% |
| 169594 | 1.1.13.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 | 0.68 | 63.0 | 5.55e-01 | 100.0% | 91.3% |
| 185291 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.68 | 60.0 | 6.08e-01 | 100.0% | 98.8% |
| 4669352 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 63.0 | 5.67e-01 | 100.0% | 83.6% |
| 4260208 | 1.1.13.62 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 | 0.68 | 62.0 | 5.63e-01 | 97.6% | 100.0% |
| 4596341 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.67 | 47.0 | 4.53e-01 | 87.8% | 63.2% |
| 3587815 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 61.0 | 5.58e-01 | 100.0% | 92.4% |
| 4346748 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.65 | 56.0 | 4.80e-01 | 100.0% | 59.2% |
| 119197 | 1.1.13.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join | 0.65 | 58.0 | 5.28e-01 | 100.0% | 88.1% |
| 4028981 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.65 | 57.0 | 4.16e-01 | 100.0% | 36.4% |
| 1883205 | 1.1.13.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N | 0.64 | 58.0 | 5.24e-01 | 100.0% | 92.7% |
| 1309427 | 1.1.5.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 | 0.64 | 58.0 | 4.06e-01 | 100.0% | 39.3% |
| 5061894 | 1.1.12.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins | 0.64 | 53.0 | 5.01e-01 | 100.0% | 75.0% |
| 2989727 | 1.1.13.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N | 0.62 | 56.0 | 5.11e-01 | 98.8% | 95.3% |
| 1096951 | 1.1.5.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 | 0.62 | 55.0 | 3.88e-01 | 100.0% | 38.8% |
| 3501754 | 1.1.13.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N | 0.62 | 56.0 | 5.12e-01 | 100.0% | 91.4% |
| 4333010 | 1.1.7.70 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II | 0.61 | 46.0 | 4.83e-01 | 82.9% | 88.0% |
| 4490158 | 1.1.13.59 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Beta-barrel_GLAA-B_II | 0.61 | 45.0 | 4.74e-01 | 81.7% | 86.7% |
| 3249410 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 41.0 | 4.37e-01 | 86.6% | 84.1% |
| 1721803 | 11.1.1.127 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL6Ra-bind | 0.60 | 43.0 | 4.26e-01 | 85.4% | 72.6% |
| 3946118 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.60 | 47.0 | 4.88e-01 | 84.1% | 98.7% |
| 4518787 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.59 | 41.0 | 4.23e-01 | 90.2% | 80.0% |
| 4072878 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.58 | 41.0 | 4.20e-01 | 93.9% | 77.5% |
| 4154363 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.58 | 47.0 | 4.10e-01 | 100.0% | 56.9% |
| 3277508 | 11.1.1.793 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 | 0.57 | 41.0 | 3.92e-01 | 86.6% | 64.0% |
| 3249204 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 43.0 | 4.12e-01 | 84.1% | 70.5% |
| 4234560 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.57 | 48.0 | 4.14e-01 | 100.0% | 58.5% |
| 3795449 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.56 | 44.0 | 3.99e-01 | 86.6% | 68.7% |
| 3261286 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 44.0 | 4.08e-01 | 86.6% | 67.6% |
| 3243030 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.54 | 42.0 | 3.93e-01 | 82.9% | 69.0% |
| 4382946 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.54 | 46.0 | 3.44e-01 | 96.3% | 39.5% |
| 3956124 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.54 | 46.0 | 3.42e-01 | 95.1% | 40.5% |
| 3481519 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.53 | 47.0 | 3.52e-01 | 100.0% | 45.1% |
| 4944566 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 38.0 | 3.44e-01 | 78.0% | 80.0% |
| 3227984 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.51 | 37.0 | 3.52e-01 | 91.5% | 64.0% |
| 4184401 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 36.0 | 3.00e-01 | 78.0% | 52.5% |
| 3603956 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.50 | 45.0 | 3.24e-01 | 100.0% | 53.2% |