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NC_019709.1__YP_007111666.1__F854_gp29__00029
Bact-VirNC_019709.1__YP_007111666.1__F854_gp29__00029
Identity
- Accession:
- NC_019709 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Taxonomy
TaxID: 1147153
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-77
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qi2A02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.70 | 56.0 | 4.57e-01 | 100.0% | 46.5% |
| 3agkA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.69 | 57.0 | 4.48e-01 | 100.0% | 42.7% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 54.0 | 5.18e-01 | 100.0% | 80.3% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.65 | 37.0 | 2.94e-01 | 73.2% | 26.1% |
| 1ry6A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.64 | 54.0 | 3.35e-01 | 92.9% | 32.6% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.61 | 43.0 | 3.26e-01 | 82.1% | 29.3% |
| 1lrzA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 51.0 | 3.48e-01 | 92.9% | 43.1% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 44.0 | 3.51e-01 | 82.1% | 94.5% |
| 7kseA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 45.0 | 3.37e-01 | 83.9% | 31.5% |
| 4lrzE01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.58 | 50.0 | 3.51e-01 | 96.4% | 36.0% |
| 1kutA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 42.0 | 3.24e-01 | 78.6% | 54.1% |
| 2fl4A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 41.0 | 3.40e-01 | 80.4% | 41.3% |
| 3oh8A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 43.0 | 3.27e-01 | 82.1% | 92.9% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.57 | 43.0 | 3.43e-01 | 94.6% | 38.8% |
| 1wapA00 | 2.60.40.50 | Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like | 0.57 | 40.0 | 3.80e-01 | 98.2% | 61.8% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 43.0 | 3.17e-01 | 83.9% | 88.9% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 43.0 | 3.21e-01 | 82.1% | 93.2% |
| 3cjmA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 48.0 | 3.15e-01 | 96.4% | 27.1% |
| 3c8iA00 | 2.40.410.10 | Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily | 0.56 | 40.0 | 3.20e-01 | 80.4% | 89.0% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.55 | 45.0 | 3.22e-01 | 100.0% | 35.0% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 43.0 | 3.10e-01 | 85.7% | 89.4% |
| 3mmhA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 45.0 | 3.30e-01 | 94.6% | 43.7% |
| 3n7cA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 45.0 | 3.66e-01 | 100.0% | 47.2% |
| 1ukxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 45.0 | 3.54e-01 | 100.0% | 47.4% |
| 2l55A00 | 2.40.50.320 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF | 0.54 | 43.0 | 3.76e-01 | 85.7% | 96.3% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.54 | 32.0 | 2.98e-01 | 76.8% | 45.2% |
| 4dimA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 44.0 | 3.02e-01 | 96.4% | 85.0% |
| 1rzuB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 46.0 | 2.97e-01 | 100.0% | 41.3% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 46.0 | 3.63e-01 | 100.0% | 47.5% |
| 3d8pB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 43.0 | 3.15e-01 | 92.9% | 61.9% |
| 3ix3A00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 42.0 | 3.20e-01 | 100.0% | 46.6% |
| 7z6eA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 41.0 | 3.30e-01 | 92.9% | 63.9% |
| 2q2rA02 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.52 | 46.0 | 3.11e-01 | 100.0% | 40.9% |
| 2el8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 42.0 | 3.75e-01 | 100.0% | 74.7% |
| 2bcfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 44.0 | 2.84e-01 | 96.4% | 97.7% |
| 1e3hA01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.51 | 42.0 | 2.79e-01 | 92.9% | 55.6% |
| 3eeaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 41.0 | 3.19e-01 | 100.0% | 44.4% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.50 | 40.0 | 3.17e-01 | 100.0% | 44.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4218879 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.69 | 59.0 | 4.32e-01 | 98.2% | 37.4% |
| 3823001 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.65 | 43.0 | 3.44e-01 | 100.0% | 34.5% |
| 4344652 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.65 | 56.0 | 4.51e-01 | 100.0% | 86.1% |
| 3484357 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.65 | 48.0 | 3.98e-01 | 100.0% | 42.7% |
| 3947082 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 50.0 | 4.37e-01 | 100.0% | 56.7% |
| 5007391 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.62 | 44.0 | 2.77e-01 | 75.0% | 89.1% |
| 5030386 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.60 | 51.0 | 3.76e-01 | 100.0% | 38.8% |
| 3870867 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.60 | 46.0 | 3.61e-01 | 83.9% | 92.5% |
| 3196827 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.59 | 39.0 | 3.65e-01 | 100.0% | 52.0% |
| 5001130 | 101.1.2.44 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 | 0.58 | 47.0 | 3.95e-01 | 91.1% | 81.0% |
| 3227570 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.58 | 45.0 | 3.33e-01 | 100.0% | 29.4% |
| 5038002 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.58 | 41.0 | 3.09e-01 | 82.1% | 30.1% |
| 3464233 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.57 | 49.0 | 4.46e-01 | 100.0% | 77.5% |
| 3679402 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 49.0 | 3.59e-01 | 100.0% | 43.8% |
| 3211748 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 49.0 | 3.73e-01 | 100.0% | 48.6% |
| 3718301 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.57 | 48.0 | 4.17e-01 | 100.0% | 62.1% |
| 2523878 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.56 | 44.0 | 3.52e-01 | 98.2% | 41.2% |
| 3814983 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.56 | 47.0 | 4.39e-01 | 100.0% | 85.3% |
| 3894565 | 4207.1.2.65 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › OLF | 0.56 | 45.0 | 2.69e-01 | 89.3% | 17.5% |
| 5011789 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.56 | 47.0 | 3.20e-01 | 100.0% | 70.0% |
| 3641525 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.56 | 48.0 | 3.35e-01 | 100.0% | 36.1% |
| 4609138 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.56 | 44.0 | 3.38e-01 | 92.9% | 66.7% |
| 4052358 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 47.0 | 4.41e-01 | 100.0% | 80.0% |
| 3880957 | 220.1.1.18 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB | 0.55 | 43.0 | 3.32e-01 | 100.0% | 34.7% |
| 3236478 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.55 | 42.0 | 3.24e-01 | 89.3% | 67.8% |
| 3411578 | 220.1.1.115 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 | 0.55 | 45.0 | 3.39e-01 | 100.0% | 35.2% |
| 5051892 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.55 | 44.0 | 2.97e-01 | 92.9% | 64.8% |
| 3242374 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.54 | 40.0 | 3.37e-01 | 100.0% | 43.5% |
| 3936380 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 47.0 | 2.86e-01 | 100.0% | 15.7% |
| 3772274 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.54 | 47.0 | 3.38e-01 | 96.4% | 67.5% |
| 5004589 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.54 | 43.0 | 3.51e-01 | 100.0% | 46.4% |
| 4848559 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 45.0 | 3.13e-01 | 94.6% | 41.6% |
| 3526272 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.54 | 42.0 | 3.15e-01 | 100.0% | 32.7% |
| 3557698 | 220.1.1.122 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › C2_SHIP1-2_first | 0.53 | 46.0 | 3.77e-01 | 100.0% | 53.0% |
| 3337433 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.53 | 44.0 | 4.02e-01 | 100.0% | 71.2% |
| 3226349 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.53 | 46.0 | 3.35e-01 | 96.4% | 66.5% |
| 3452819 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.53 | 44.0 | 3.81e-01 | 100.0% | 68.4% |
| 3366565 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.53 | 43.0 | 3.64e-01 | 100.0% | 51.8% |
| 3334247 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 43.0 | 3.63e-01 | 100.0% | 64.5% |
| 4452289 | 4000.1.1.1 ↗ | a+b two layers › Escherichia coli HybE › Escherichia coli HybE › Escherichia coli HybE › NiFe-hyd_HybE | 0.53 | 45.0 | 3.47e-01 | 100.0% | 63.6% |
| 3859768 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 47.0 | 3.32e-01 | 100.0% | 36.0% |
| 3810495 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.53 | 42.0 | 3.68e-01 | 100.0% | 61.0% |
| 3613468 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 41.0 | 3.98e-01 | 100.0% | 80.0% |
| 3903560 | 220.1.1.85 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID_2 | 0.52 | 46.0 | 3.42e-01 | 100.0% | 41.4% |
| 3997242 | 5.1.3.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth | 0.51 | 44.0 | 2.75e-01 | 100.0% | 24.5% |
| 3791945 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.51 | 45.0 | 3.02e-01 | 100.0% | 49.3% |
| 3553324 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 43.0 | 2.75e-01 | 100.0% | 34.1% |
| 4982249 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 44.0 | 3.68e-01 | 96.4% | 100.0% |
| 3346566 | 1.1.7.85 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › BRX | 0.50 | 35.0 | 3.54e-01 | 92.9% | 72.7% |
| 3827622 | 12.2.1.7 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › BRX | 0.50 | 35.0 | 3.43e-01 | 92.9% | 66.7% |
| 3412495 | 220.1.1.85 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID_2 | 0.50 | 43.0 | 3.17e-01 | 100.0% | 66.1% |