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NC_019713.1__YP_007111921.1__F862_gp075__00075

Bact-Vir

NC_019713.1__YP_007111921.1__F862_gp075__00075

Identity

Accession:
NC_019713 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mardecavirus› Vibrio_phage_vB_VpaS_MAR10

TaxID: 1229755

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-229
PDB
Domain cluster: rep: SRR1747023_scaffold_5_prodigal-single.1__X__X__00220__D6-190
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gpcA00 3.90.198.10 Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein 0.82 78.0 7.22e-01 100.0% 89.4%
3cjrB01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.67 26.0 4.19e-01 80.3% 92.9%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.66 27.0 3.70e-01 82.0% 72.8%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 29.0 3.50e-01 79.2% 70.7%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.54 25.0 3.56e-01 82.0% 100.0%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 21.0 2.71e-01 83.1% 59.8%
1gsoA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 38.0 4.30e-01 93.8% 100.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995733 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.92 89.0 8.66e-01 100.0% 92.6%
3573974 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.85 81.0 7.94e-01 100.0% 95.3%
378 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.82 77.0 7.27e-01 100.0% 92.9%
3942656 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.78 73.0 6.92e-01 100.0% 95.1%
4886249 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.67 18.0 3.09e-01 83.1% 64.6%
3841256 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 21.0 2.61e-01 83.1% 51.8%
3933347 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 22.0 3.01e-01 83.1% 68.4%
4025579 2.1.1.86 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 0.52 25.0 3.28e-01 84.3% 81.1%
3190716 2.1.1.86 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 0.52 25.0 3.21e-01 83.7% 79.0%
4020515 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 26.0 3.32e-01 84.3% 85.0%
3900161 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 22.0 2.46e-01 84.8% 47.9%
2129748 2.1.1.88 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD2 0.50 24.0 3.05e-01 84.8% 76.6%