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NC_019720.1__YP_007112375.1__F857_gp32__00032
Bact-VirNC_019720.1__YP_007112375.1__F857_gp32__00032
Identity
- Accession:
- NC_019720 ↗
- Kingdom:
- phage
Quality
50.5
mean pLDDT
Taxonomy
TaxID: 1147156
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-76
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.66 | 51.0 | 3.72e-01 | 83.6% | 34.3% |
| 2h6uA00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.64 | 44.0 | 3.64e-01 | 70.1% | 48.2% |
| 3floB00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.64 | 50.0 | 3.67e-01 | 85.1% | 32.8% |
| 4wgkA02 | 2.60.40.2300 | Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain | 0.58 | 50.0 | 3.93e-01 | 92.5% | 80.5% |
| 3m6uA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.57 | 40.0 | 3.77e-01 | 76.1% | 97.7% |
| 4d7pA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.57 | 44.0 | 3.89e-01 | 100.0% | 58.3% |
| 5bncB01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 41.0 | 3.24e-01 | 82.1% | 57.7% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 38.0 | 3.08e-01 | 76.1% | 47.9% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 37.0 | 3.05e-01 | 76.1% | 50.4% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.52 | 38.0 | 2.85e-01 | 79.1% | 93.9% |
| 3aa0B01 | 1.20.58.570 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain | 0.52 | 31.0 | 2.93e-01 | 100.0% | 44.3% |
| 5hw3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 37.0 | 2.44e-01 | 74.6% | 95.5% |
| 3gasB02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 36.0 | 2.85e-01 | 76.1% | 51.8% |
| 7neaA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.50 | 36.0 | 2.98e-01 | 76.1% | 62.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3925777 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.62 | 40.0 | 2.96e-01 | 89.6% | 24.7% |
| 3798349 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 38.0 | 3.53e-01 | 70.1% | 51.8% |
| 3818705 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.58 | 31.0 | 2.93e-01 | 79.1% | 42.5% |
| 3781851 | 5050.1.1.32 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn | 0.56 | 43.0 | 3.02e-01 | 86.6% | 80.4% |
| 3595016 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 37.0 | 3.15e-01 | 70.1% | 42.7% |
| 3694265 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.55 | 41.0 | 3.41e-01 | 85.1% | 93.3% |
| 3455769 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 44.0 | 3.78e-01 | 97.0% | 75.5% |
| 3998576 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 37.0 | 2.79e-01 | 82.1% | 30.9% |
| 4399557 | 4020.1.1.1 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.50 | 36.0 | 2.92e-01 | 76.1% | 61.6% |
| 4964967 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.50 | 40.0 | 3.22e-01 | 91.0% | 87.1% |
D2
medium
residues 87-137