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NC_019767.1__YP_007151648.1__F865_gp41__00041

Bact-Vir

NC_019767.1__YP_007151648.1__F865_gp41__00041

Identity

Accession:
NC_019767 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kwaitsingvirus› Escherichia_phage_HK544

TaxID: 432201

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-92
PDB
Domain cluster: rep: ON470608.1__URC09907.1__X__00002__D31-94
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 36.0 3.74e-01 70.7% 47.9%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.72 39.0 4.84e-01 78.7% 88.6%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.66 46.0 3.40e-01 72.0% 37.6%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 37.0 3.69e-01 78.7% 51.9%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.63 39.0 3.66e-01 80.0% 51.6%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 38.0 3.67e-01 92.0% 52.3%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 41.0 3.35e-01 85.3% 37.0%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 44.0 4.72e-01 88.0% 86.4%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.59 41.0 3.22e-01 73.3% 34.3%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.59 42.0 3.37e-01 77.3% 86.0%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.58 34.0 3.76e-01 72.0% 74.6%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 45.0 2.86e-01 90.7% 38.5%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 41.0 3.48e-01 80.0% 55.7%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.55 41.0 3.54e-01 80.0% 69.7%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.09e-01 74.7% 35.4%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.55 44.0 3.38e-01 86.7% 57.9%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.55 42.0 3.33e-01 84.0% 68.3%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.42e-01 88.0% 83.7%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.54 36.0 2.71e-01 70.7% 33.0%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.54 42.0 3.38e-01 84.0% 63.4%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 43.0 3.78e-01 94.7% 58.3%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 40.0 3.46e-01 82.7% 77.5%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.54 43.0 3.54e-01 85.3% 84.8%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 36.0 2.93e-01 70.7% 69.3%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 3.43e-01 80.0% 91.2%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.27e-01 88.0% 67.9%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.51 32.0 3.68e-01 72.0% 88.7%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.70e-01 84.0% 70.7%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 38.0 3.36e-01 85.3% 58.3%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 2.98e-01 77.3% 62.8%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.51 39.0 3.17e-01 84.0% 66.0%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.51 40.0 2.64e-01 88.0% 63.5%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.50 38.0 3.12e-01 81.3% 54.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018976 295.1.1.53 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 0.86 64.0 6.94e-01 85.3% 92.1%
3797440 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.77 56.0 4.06e-01 76.0% 65.6%
3623409 11.1.5.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box 0.77 56.0 4.07e-01 76.0% 66.2%
3939294 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 61.0 3.83e-01 90.7% 35.3%
3769918 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.69 53.0 4.63e-01 81.3% 91.8%
3458525 5.1.5.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 0.66 50.0 3.31e-01 80.0% 20.7%
3278413 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.66 46.0 3.70e-01 72.0% 39.3%
3594422 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 54.0 4.11e-01 90.7% 50.3%
3727055 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.64 45.0 3.54e-01 72.0% 47.6%
3936894 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.63 43.0 3.07e-01 72.0% 25.7%
3571697 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.62 42.0 3.14e-01 70.7% 30.3%
3584227 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.62 42.0 3.38e-01 70.7% 48.3%
3609844 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 42.0 3.36e-01 70.7% 40.0%
3773175 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.61 42.0 3.24e-01 73.3% 33.5%
3545367 632.11.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N 0.61 48.0 3.50e-01 85.3% 78.0%
3278670 230.1.1.1 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › Uricase 0.60 43.0 3.57e-01 77.3% 77.9%
3506845 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.59 40.0 2.83e-01 70.7% 22.8%
3817060 109.4.1.1794 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.59 49.0 2.98e-01 90.7% 26.6%
3277757 4.1.1.234 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2469 0.59 41.0 3.85e-01 89.3% 60.0%
3895915 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.58 41.0 2.95e-01 73.3% 30.7%
3480718 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.58 42.0 2.67e-01 78.7% 14.1%
4976732 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.58 46.0 3.05e-01 89.3% 60.3%
3870002 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.57 48.0 2.97e-01 90.7% 26.9%
2938507 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.57 37.0 3.26e-01 72.0% 43.1%
3942921 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 2.75e-01 70.7% 50.7%
3484575 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 42.0 3.57e-01 78.7% 75.8%
3937222 243.1.1.50 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind 0.56 43.0 3.13e-01 80.0% 55.8%
3269520 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.56 39.0 2.84e-01 72.0% 34.8%
4153293 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.56 38.0 3.29e-01 70.7% 57.5%
4459947 230.1.1.0 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like 0.56 40.0 3.25e-01 77.3% 83.2%
4984424 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.56 44.0 2.85e-01 89.3% 60.8%
3446217 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.55 38.0 2.66e-01 76.0% 19.3%
169039 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.55 41.0 3.48e-01 80.0% 55.7%
1094951 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.55 39.0 3.09e-01 74.7% 35.4%
3557159 11.2.1.32 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK_N 0.55 44.0 3.32e-01 93.3% 80.5%
3380516 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.55 44.0 2.89e-01 89.3% 72.6%
4071803 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 37.0 2.81e-01 70.7% 32.6%
3038793 7579.1.1.124 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH, Hydrolase_4 0.54 38.0 2.65e-01 76.0% 28.1%
2658958 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.53 39.0 3.40e-01 81.3% 47.6%
3410333 11.1.1.673 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.53 37.0 3.26e-01 73.3% 86.1%
4954308 210.1.1.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.53 41.0 3.08e-01 88.0% 91.6%
3199457 59.1.2.1 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.53 32.0 3.06e-01 73.3% 51.1%
3973593 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.52 40.0 3.29e-01 80.0% 81.4%
4186556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 45.0 3.98e-01 96.0% 73.6%
3599587 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.27e-01 93.3% 52.4%
3827633 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 40.0 3.44e-01 88.0% 62.3%
5014316 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 41.0 3.31e-01 90.7% 77.5%
3271375 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.28e-01 93.3% 97.2%
3714739 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.51 46.0 3.74e-01 100.0% 86.3%
220332 11.1.1.71 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Adeno_GP19K 0.51 41.0 3.70e-01 84.0% 70.7%
3608538 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.15e-01 93.3% 51.8%
3731318 9.16.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.51 38.0 2.96e-01 81.3% 64.8%
3388283 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.51 40.0 3.19e-01 86.7% 59.4%
3654114 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.50 39.0 2.96e-01 88.0% 63.8%
5064585 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 38.0 3.64e-01 81.3% 74.4%