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NC_019914.1__YP_007236591.1__G175_gp23__00023
Bact-VirNC_019914.1__YP_007236591.1__G175_gp23__00023
Identity
- Accession:
- NC_019914 ↗
- Kingdom:
- phage
Quality
76.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-79
Domain cluster:
rep: LR215721.1__VEV89191.1__X__00038__D1-67
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d0oB00 | 3.40.50.10150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit | 0.78 | 66.0 | 5.90e-01 | 93.5% | 86.1% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.68 | 48.0 | 4.72e-01 | 74.0% | 95.1% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 53.0 | 4.14e-01 | 84.4% | 60.7% |
| 7dpyB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.63 | 44.0 | 4.30e-01 | 71.4% | 100.0% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 51.0 | 4.57e-01 | 94.8% | 96.5% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.61 | 42.0 | 4.09e-01 | 72.7% | 97.7% |
| 1fblA02 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.61 | 46.0 | 3.47e-01 | 81.8% | 93.7% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.61 | 44.0 | 2.80e-01 | 77.9% | 97.8% |
| 6phxA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.59 | 44.0 | 2.95e-01 | 79.2% | 99.7% |
| 2mqdA00 | 3.30.1460.60 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.59 | 46.0 | 4.02e-01 | 85.7% | 94.1% |
| 6jhpA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.58 | 43.0 | 2.90e-01 | 77.9% | 99.7% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.58 | 46.0 | 3.92e-01 | 87.0% | 58.7% |
| 1f32A01 | 3.30.1120.50 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 | 0.58 | 38.0 | 4.01e-01 | 76.6% | 77.6% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 43.0 | 3.48e-01 | 81.8% | 49.3% |
| 3gdoA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 40.0 | 3.02e-01 | 74.0% | 81.4% |
| 1wlnA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.56 | 47.0 | 4.10e-01 | 93.5% | 84.2% |
| 3k6qA02 | 3.30.160.620 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 39.0 | 3.71e-01 | 77.9% | 61.8% |
| 2f09A00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.56 | 38.0 | 3.78e-01 | 70.1% | 93.9% |
| 5e50A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.56 | 45.0 | 4.23e-01 | 92.2% | 93.0% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.56 | 46.0 | 4.27e-01 | 97.4% | 72.4% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.55 | 42.0 | 4.29e-01 | 84.4% | 92.2% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.55 | 42.0 | 3.49e-01 | 96.1% | 45.7% |
| 4czxA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 42.0 | 2.82e-01 | 84.4% | 82.4% |
| 2llgA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 39.0 | 3.22e-01 | 75.3% | 87.4% |
| 1x99A00 | 2.60.270.20 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin | 0.55 | 41.0 | 3.47e-01 | 84.4% | 97.2% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 41.0 | 3.87e-01 | 84.4% | 80.8% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.54 | 41.0 | 3.22e-01 | 84.4% | 69.2% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.53 | 46.0 | 4.24e-01 | 98.7% | 88.1% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 37.0 | 2.92e-01 | 71.4% | 91.5% |
| 3apqA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 46.0 | 4.10e-01 | 100.0% | 100.0% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 39.0 | 3.05e-01 | 81.8% | 34.8% |
| 1shyB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 40.0 | 2.57e-01 | 85.7% | 93.6% |
| 1xfdA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.53 | 46.0 | 2.86e-01 | 100.0% | 33.2% |
| 4esnA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.52 | 42.0 | 4.21e-01 | 89.6% | 91.0% |
| 1hxnA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.51 | 41.0 | 3.02e-01 | 87.0% | 59.0% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.51 | 42.0 | 2.83e-01 | 93.5% | 56.7% |
| 2ch1A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 45.0 | 3.69e-01 | 97.4% | 72.7% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3781478 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.68 | 56.0 | 5.11e-01 | 92.2% | 91.4% |
| 862 | 9.4.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B | 0.68 | 47.0 | 4.65e-01 | 72.7% | 93.9% |
| 3928803 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.66 | 54.0 | 4.03e-01 | 89.6% | 71.0% |
| 3228995 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.66 | 48.0 | 2.90e-01 | 77.9% | 12.5% |
| 5061051 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.65 | 49.0 | 3.69e-01 | 80.5% | 94.6% |
| 3476001 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.64 | 50.0 | 4.67e-01 | 81.8% | 80.6% |
| 3887656 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.64 | 52.0 | 4.49e-01 | 92.2% | 96.2% |
| 4078246 | 9.4.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B | 0.64 | 45.0 | 4.61e-01 | 74.0% | 98.7% |
| 5009806 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 53.0 | 3.98e-01 | 94.8% | 88.3% |
| 4031368 | 3264.1.1.0 ↗ | 0.64 | 51.0 | 4.15e-01 | 87.0% | 55.9% | |
| 3243080 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.64 | 52.0 | 4.85e-01 | 93.5% | 92.0% |
| 4044230 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.63 | 53.0 | 4.11e-01 | 96.1% | 78.3% |
| 5026029 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.62 | 52.0 | 3.88e-01 | 92.2% | 96.5% |
| 5074866 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.62 | 46.0 | 3.46e-01 | 79.2% | 95.8% |
| 3976843 | 9.11.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC | 0.62 | 42.0 | 4.02e-01 | 70.1% | 85.4% |
| 3992641 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.61 | 44.0 | 4.60e-01 | 75.3% | 92.9% |
| None | — | 0.60 | 42.0 | 2.92e-01 | 74.0% | 75.6% | |
| 4247937 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 41.0 | 3.67e-01 | 71.4% | 62.7% |
| 3619889 | 331.23.1.7 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C | 0.60 | 43.0 | 4.47e-01 | 75.3% | 91.4% |
| 4022926 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 43.0 | 2.74e-01 | 77.9% | 38.9% |
| 3490378 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.59 | 43.0 | 4.25e-01 | 76.6% | 90.0% |
| 4975535 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.58 | 47.0 | 4.72e-01 | 97.4% | 86.3% |
| 4239781 | 3006.1.1.6 ↗ | a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C | 0.58 | 42.0 | 4.40e-01 | 76.6% | 95.7% |
| 3618540 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 41.0 | 4.21e-01 | 81.8% | 78.7% |
| 4940077 | 5.1.5.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 | 0.57 | 42.0 | 2.72e-01 | 79.2% | 57.4% |
| 4315725 | 295.1.1.12 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0231 | 0.56 | 39.0 | 3.42e-01 | 72.7% | 74.2% |
| 3739664 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.56 | 42.0 | 4.38e-01 | 79.2% | 90.0% |
| 3781848 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.56 | 41.0 | 4.31e-01 | 77.9% | 90.0% |
| 4953676 | 314.1.1.8 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › DUF366 | 0.56 | 49.0 | 3.67e-01 | 97.4% | 40.0% |
| 3175626 | 331.1.1.13 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C | 0.56 | 41.0 | 4.18e-01 | 77.9% | 93.3% |
| 4941285 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.56 | 42.0 | 4.40e-01 | 79.2% | 91.4% |
| 3263503 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.56 | 41.0 | 4.16e-01 | 77.9% | 85.3% |
| 4031750 | 274.1.1.25 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF | 0.55 | 38.0 | 3.54e-01 | 72.7% | 74.7% |
| 3930593 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 42.0 | 2.86e-01 | 87.0% | 87.5% |
| 3171576 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.54 | 41.0 | 4.06e-01 | 80.5% | 95.0% |
| 3166905 | 5.1.4.74 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N | 0.54 | 39.0 | 2.69e-01 | 77.9% | 78.7% |
| 3774584 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 41.0 | 2.75e-01 | 87.0% | 82.1% |
| 5002867 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 40.0 | 3.78e-01 | 77.9% | 71.1% |
| 4425810 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 36.0 | 3.99e-01 | 93.5% | 91.7% |
| 3901561 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 41.0 | 2.79e-01 | 87.0% | 83.0% |
| 3514467 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 44.0 | 3.73e-01 | 92.2% | 86.9% |
| 3672898 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.53 | 43.0 | 3.71e-01 | 100.0% | 56.0% |
| 1107912 | 71.1.1.7 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_2 | 0.53 | 39.0 | 3.05e-01 | 81.8% | 34.8% |
| 3627094 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 39.0 | 2.70e-01 | 84.4% | 85.0% |
| 3797677 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 40.0 | 2.83e-01 | 88.3% | 85.1% |
| 3647550 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.51 | 38.0 | 3.73e-01 | 79.2% | 90.6% |
| 3400046 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.51 | 39.0 | 2.95e-01 | 87.0% | 79.6% |
| 3914072 | 633.23.1.19 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › TMEM37 | 0.51 | 35.0 | 2.68e-01 | 71.4% | 74.4% |
| 3403609 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.51 | 36.0 | 3.67e-01 | 76.6% | 77.2% |
| 3834402 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.50 | 40.0 | 2.68e-01 | 87.0% | 88.4% |