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NC_019918.1__YP_007236907.1__BN405_2-10_Ab1_orf_86__00086

Bact-Vir

NC_019918.1__YP_007236907.1__BN405_2-10_Ab1_orf_86__00086

Identity

Accession:
NC_019918 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Pakpunavirus› Pseudomonas_phage_vB_PaeM_C2-10_Ab1

TaxID: 1231048

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-88
PDB
Domain cluster: rep: NC_055841.1__YP_010107183.1__KNU99_gp041__00041__D80-140
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.68 51.0 4.42e-01 81.2% 65.8%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.67 50.0 4.31e-01 82.6% 65.8%
3lwcA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 48.0 4.18e-01 87.0% 52.4%
4f23A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.65 58.0 4.04e-01 100.0% 90.9%
1yhfA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 48.0 4.12e-01 87.0% 50.0%
4urpA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.64 37.0 2.75e-01 98.6% 21.9%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 48.0 4.14e-01 87.0% 51.4%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.64 49.0 4.31e-01 84.1% 100.0%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.63 49.0 4.25e-01 85.5% 98.1%
3fzqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.63 44.0 3.79e-01 75.4% 93.0%
3ilfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 3.68e-01 100.0% 69.3%
4a7kA02 2.60.120.990 Mainly Beta › Sandwich › Jelly Rolls › 0.62 46.0 3.07e-01 87.0% 18.6%
4mv2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 45.0 3.83e-01 87.0% 45.8%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 47.0 4.36e-01 84.1% 79.1%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 46.0 3.99e-01 87.0% 51.4%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 47.0 4.07e-01 87.0% 54.3%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 45.0 4.16e-01 84.1% 60.7%
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 45.0 3.95e-01 84.1% 52.9%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 44.0 3.65e-01 87.0% 42.2%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.60 49.0 3.79e-01 89.9% 51.6%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 44.0 3.78e-01 87.0% 48.2%
1o59A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 51.0 4.07e-01 97.1% 78.4%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.59 48.0 4.08e-01 89.9% 64.3%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 44.0 3.70e-01 82.6% 88.8%
2napA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 40.0 3.48e-01 72.5% 100.0%
3aclA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 43.0 3.67e-01 87.0% 47.5%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 45.0 3.49e-01 87.0% 37.6%
5f29B00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.58 43.0 4.34e-01 87.0% 80.3%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 44.0 4.01e-01 84.1% 94.7%
3myxA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 45.0 3.82e-01 87.0% 65.2%
4jzjC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.44e-01 85.5% 85.7%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 49.0 4.22e-01 98.6% 96.3%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.96e-01 76.8% 94.7%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.58e-01 88.4% 77.4%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 47.0 3.88e-01 100.0% 78.4%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.30e-01 91.3% 63.6%
1cwvA05 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 42.0 3.83e-01 88.4% 100.0%
4bbyA03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 45.0 3.86e-01 97.1% 93.4%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 40.0 3.18e-01 84.1% 96.4%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.17e-01 100.0% 97.0%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.59e-01 100.0% 98.7%
4qgnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 3.39e-01 98.6% 56.2%
4n2kA01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.52 45.0 3.82e-01 100.0% 67.2%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.52 40.0 3.20e-01 87.0% 40.3%
2zxeA01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.52 39.0 3.05e-01 84.1% 35.5%
4ylmX00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.52 45.0 3.06e-01 100.0% 69.0%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.47e-01 98.6% 65.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.54e-01 78.3% 83.3%
3afoB02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.51 37.0 3.06e-01 78.3% 76.6%
3fd4A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 38.0 3.09e-01 84.1% 68.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048308 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.68 51.0 3.61e-01 82.6% 90.7%
4649270 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.67 41.0 4.08e-01 71.0% 60.0%
5016339 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.65 48.0 3.42e-01 81.2% 87.8%
3287407 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.64 48.0 4.38e-01 87.0% 58.9%
3997163 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.64 47.0 4.32e-01 82.6% 60.7%
5067107 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.63 47.0 4.39e-01 79.7% 100.0%
4263053 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 44.0 4.20e-01 76.8% 100.0%
1839933 10.12.1.60 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AUDH_Cupin 0.62 46.0 3.94e-01 87.0% 48.3%
4540843 4.1.1.434 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2642 0.62 43.0 4.46e-01 73.9% 92.3%
3943746 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.61 45.0 3.78e-01 84.1% 45.0%
4962210 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.61 47.0 4.08e-01 87.0% 52.7%
5051145 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.61 45.0 3.85e-01 84.1% 49.1%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 48.0 4.79e-01 87.0% 95.9%
4936740 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 42.0 4.27e-01 79.7% 72.9%
4955697 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 47.0 4.14e-01 87.0% 56.2%
3386406 10.32.1.89 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ape1_N 0.60 49.0 3.92e-01 88.4% 51.9%
4432348 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 46.0 4.70e-01 85.5% 98.5%
4963717 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.60 48.0 4.50e-01 91.3% 77.8%
4060125 10.12.1.63 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MPI_cupin_dom 0.60 44.0 4.06e-01 84.1% 60.0%
3618626 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 44.0 4.05e-01 82.6% 60.0%
5032036 1.1.7.36 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_U32_C 0.60 45.0 4.34e-01 82.6% 100.0%
4015504 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 46.0 3.59e-01 87.0% 37.4%
4010358 10.12.1.32 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › EutQ 0.60 43.0 3.45e-01 87.0% 37.2%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.30e-01 78.3% 98.6%
4979413 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 47.0 4.26e-01 87.0% 76.6%
3959843 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.59 50.0 3.49e-01 95.7% 45.0%
4281699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.35e-01 81.2% 100.0%
3391397 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 44.0 4.12e-01 82.6% 98.9%
3684940 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 48.0 4.01e-01 89.9% 61.7%
3532264 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.59 51.0 3.99e-01 100.0% 80.6%
1223478 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.59 50.0 3.41e-01 97.1% 40.7%
4965211 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 47.0 3.98e-01 88.4% 53.0%
4342488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.72e-01 85.5% 100.0%
2414505 10.12.1.26 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin_C 0.58 43.0 3.39e-01 87.0% 36.6%
3514708 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 46.0 3.83e-01 88.4% 62.4%
4945153 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.58 49.0 3.61e-01 98.6% 82.5%
3957537 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 46.0 4.00e-01 87.0% 57.1%
5009477 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 46.0 4.06e-01 89.9% 70.5%
3779679 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 49.0 3.26e-01 100.0% 29.8%
3919483 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 49.0 3.25e-01 100.0% 30.3%
5014791 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 3.86e-01 88.4% 53.3%
3226649 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 48.0 3.60e-01 100.0% 52.5%
3945834 1.1.7.79 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.57 43.0 3.89e-01 84.1% 99.0%
5002088 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.01e-01 78.3% 88.7%
3731341 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.57 46.0 3.49e-01 92.8% 74.1%
3916871 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 48.0 3.89e-01 100.0% 72.4%
1316605 10.32.1.50 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5077 0.57 44.0 3.65e-01 87.0% 55.7%
5004468 225.1.1.19 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › SACS 0.56 48.0 3.51e-01 98.6% 46.5%
3499719 4261.1.1.2 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.56 44.0 3.78e-01 92.8% 74.4%
3483514 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.56 44.0 3.77e-01 92.8% 74.4%
3939955 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.51e-01 79.7% 67.8%
3214719 10.32.1.21 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.55 47.0 3.64e-01 97.1% 59.4%
3492162 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 43.0 3.42e-01 87.0% 41.3%
3212270 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 45.0 3.89e-01 100.0% 79.2%
3289328 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 46.0 3.93e-01 98.6% 60.0%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.90e-01 78.3% 82.9%
3494269 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 45.0 2.93e-01 98.6% 55.9%
3260566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.71e-01 91.3% 74.3%
4935256 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 2.97e-01 97.1% 31.6%
5007604 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.51 38.0 3.86e-01 97.1% 85.7%
3258358 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.50 41.0 3.57e-01 100.0% 82.4%
3369011 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.50 42.0 2.54e-01 100.0% 27.0%
4507201 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.50 38.0 2.80e-01 88.4% 40.9%
4281921 270.1.1.1 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Pur_DNA_glyco 0.50 43.0 3.19e-01 98.6% 82.4%