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NC_019919.2__YP_007236985.2__BN79_006__00008
Bact-VirNC_019919.2__YP_007236985.2__BN79_006__00008
Identity
- Accession:
- NC_019919 ↗
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Demerecviridae›
Epseptimavirus›
Yersinia_phage_phiR2-01
TaxID: 1206557
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-67
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24188.2 best | DUF7416 | 89.6 | 1.30e-25 | 100.0% | 68.7% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 64.0 | 6.30e-01 | 100.0% | 84.6% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.77 | 59.0 | 3.87e-01 | 93.8% | 19.8% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.77 | 65.0 | 5.30e-01 | 95.8% | 51.1% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.75 | 61.0 | 5.28e-01 | 97.9% | 57.0% |
| 2o5iN07 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.73 | 62.0 | 4.74e-01 | 100.0% | 41.4% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 49.0 | 4.16e-01 | 77.1% | 43.6% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.71 | 59.0 | 3.97e-01 | 100.0% | 67.3% |
| 3b0cW00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.71 | 57.0 | 5.03e-01 | 100.0% | 60.3% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 56.0 | 5.28e-01 | 100.0% | 71.7% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.71 | 59.0 | 4.91e-01 | 100.0% | 57.1% |
| 4nphA02 | 1.20.1270.330 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.70 | 51.0 | 4.44e-01 | 79.2% | 54.1% |
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.69 | 49.0 | 4.38e-01 | 77.1% | 58.6% |
| 1cpyA02 | 1.10.287.410 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 51.0 | 4.55e-01 | 83.3% | 55.6% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 56.0 | 4.98e-01 | 100.0% | 64.0% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.68 | 44.0 | 3.44e-01 | 72.9% | 31.7% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 57.0 | 5.25e-01 | 100.0% | 72.7% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 47.0 | 4.32e-01 | 77.1% | 60.0% |
| 3keoA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 50.0 | 4.33e-01 | 81.2% | 58.3% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.66 | 52.0 | 4.91e-01 | 89.6% | 74.6% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 55.0 | 4.03e-01 | 100.0% | 70.8% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.64 | 49.0 | 4.78e-01 | 93.8% | 75.4% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.62 | 50.0 | 4.86e-01 | 100.0% | 92.9% |
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.61 | 49.0 | 4.25e-01 | 95.8% | 100.0% |
| 1uajA02 | 1.10.1270.20 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 | 0.56 | 49.0 | 4.23e-01 | 97.9% | 65.8% |
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 49.0 | 4.32e-01 | 100.0% | 85.3% |
| 2b3tA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.50 | 40.0 | 3.46e-01 | 100.0% | 53.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5038339 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.83 | 71.0 | 5.82e-01 | 100.0% | 52.9% |
| 1877692 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.80 | 66.0 | 6.63e-01 | 100.0% | 93.8% |
| 185993 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.80 | 65.0 | 6.03e-01 | 100.0% | 72.1% |
| 3747265 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.75 | 54.0 | 3.98e-01 | 79.2% | 29.2% |
| 4359331 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.73 | 54.0 | 4.97e-01 | 83.3% | 63.3% |
| 4511884 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.72 | 54.0 | 5.62e-01 | 85.4% | 86.7% |
| 4179648 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.72 | 51.0 | 4.71e-01 | 77.1% | 59.4% |
| 2772104 | 103.1.1.13 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RNA_pol_Rpo13 | 0.70 | 55.0 | 5.68e-01 | 89.6% | 97.7% |
| 3544646 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.68 | 57.0 | 5.02e-01 | 93.8% | 65.7% |
| 3278752 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.67 | 48.0 | 2.96e-01 | 77.1% | 12.9% |
| 4003051 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.67 | 50.0 | 4.71e-01 | 89.6% | 66.2% |
| 5077460 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 52.0 | 4.72e-01 | 91.7% | 79.4% |
| 3618557 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 50.0 | 4.11e-01 | 91.7% | 46.7% |
| 5064973 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.62 | 46.0 | 4.15e-01 | 83.3% | 57.1% |
| 2636640 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.61 | 49.0 | 4.29e-01 | 91.7% | 59.7% |
| 3455580 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.59 | 50.0 | 3.25e-01 | 100.0% | 21.2% |