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NC_019925.1__YP_007237405.1__G379_gp135__00083

Bact-Vir

NC_019925.1__YP_007237405.1__G379_gp135__00083

Identity

Accession:
NC_019925 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-74
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 57.0 3.85e-01 85.7% 48.3%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.71 49.0 3.94e-01 71.4% 75.9%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.70 50.0 3.90e-01 75.0% 47.9%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.70 61.0 5.02e-01 100.0% 54.5%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.68 59.0 4.18e-01 100.0% 59.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.66 48.0 3.38e-01 78.6% 34.4%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.66 46.0 3.65e-01 75.0% 43.3%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.65 56.0 3.47e-01 100.0% 60.9%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.65 46.0 3.31e-01 76.8% 52.3%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 47.0 3.27e-01 78.6% 38.4%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.64 53.0 3.19e-01 100.0% 15.4%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 3.95e-01 92.9% 54.3%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 3.67e-01 92.9% 41.0%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 3.95e-01 94.6% 53.9%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 53.0 3.43e-01 96.4% 48.3%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 49.0 2.91e-01 85.7% 16.6%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 48.0 3.64e-01 94.6% 34.8%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.61 49.0 4.45e-01 87.5% 87.8%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 51.0 3.23e-01 96.4% 49.7%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 46.0 3.48e-01 85.7% 79.2%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.59 51.0 3.36e-01 96.4% 89.1%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.59 43.0 4.07e-01 82.1% 65.2%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 51.0 3.17e-01 100.0% 35.7%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 47.0 4.42e-01 100.0% 73.6%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.58 46.0 4.09e-01 87.5% 81.7%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 49.0 4.09e-01 98.2% 70.6%
4mhxA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.57 44.0 2.71e-01 92.9% 90.6%
1xeaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 49.0 3.44e-01 100.0% 64.6%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 4.08e-01 98.2% 85.7%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 48.0 3.40e-01 100.0% 68.3%
3bywC00 2.60.120.610 Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain 0.56 39.0 2.91e-01 75.0% 48.1%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 48.0 3.02e-01 100.0% 33.9%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.55 41.0 2.42e-01 87.5% 9.2%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 48.0 3.92e-01 98.2% 93.3%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 3.65e-01 100.0% 43.3%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.55 45.0 4.39e-01 94.6% 88.5%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 4.34e-01 96.4% 95.8%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.54 43.0 3.67e-01 91.1% 99.0%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 47.0 3.30e-01 100.0% 69.0%
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.16e-01 91.1% 78.7%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 41.0 3.00e-01 92.9% 84.5%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 44.0 3.14e-01 100.0% 71.7%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 45.0 2.98e-01 100.0% 85.5%
4h3vB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 2.92e-01 100.0% 65.5%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 43.0 3.48e-01 100.0% 77.3%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 41.0 2.98e-01 94.6% 34.3%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 44.0 2.93e-01 100.0% 30.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3782385 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.82 60.0 3.46e-01 76.8% 23.3%
3241422 3755.3.1.627 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CNH 0.81 58.0 3.30e-01 75.0% 22.0%
3240374 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.80 57.0 3.46e-01 75.0% 34.2%
3279135 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.79 55.0 3.44e-01 73.2% 31.5%
3599747 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.78 59.0 3.59e-01 80.4% 40.0%
5059089 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.78 56.0 3.49e-01 76.8% 33.3%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.76 53.0 5.04e-01 73.2% 100.0%
3703463 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.74 54.0 2.91e-01 78.6% 10.0%
3384583 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.72 52.0 3.11e-01 76.8% 23.2%
4028413 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 56.0 3.40e-01 85.7% 32.4%
4950402 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.71 51.0 3.90e-01 76.8% 41.5%
5033945 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.69 55.0 5.15e-01 87.5% 91.4%
3244902 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.69 50.0 3.57e-01 78.6% 38.3%
3613890 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 60.0 3.61e-01 100.0% 22.0%
3707085 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.68 51.0 3.39e-01 80.4% 33.6%
3740081 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.66 56.0 4.46e-01 92.9% 100.0%
5044414 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.66 58.0 3.76e-01 100.0% 51.7%
3643744 5.1.4.122 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.66 49.0 3.14e-01 80.4% 31.4%
3222216 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 56.0 5.25e-01 96.4% 100.0%
5791 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.66 46.0 3.66e-01 75.0% 43.7%
4934114 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.65 52.0 4.77e-01 89.3% 93.3%
3967714 241.1.1.6 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.65 56.0 4.21e-01 98.2% 70.0%
5036807 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.65 57.0 4.82e-01 100.0% 86.3%
5014721 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 55.0 4.65e-01 100.0% 57.9%
5003057 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.64 49.0 4.58e-01 83.9% 91.4%
4977715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 47.0 3.76e-01 80.4% 75.7%
4979776 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.63 53.0 3.43e-01 96.4% 49.8%
5081122 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.63 48.0 4.02e-01 83.9% 50.0%
4300178 12.6.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.63 47.0 4.65e-01 80.4% 88.3%
3962450 9.27.1.0 beta barrels › Lipocalins/Streptavidin › LpqH › LpqH 0.63 54.0 4.45e-01 98.2% 89.5%
3969359 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.63 52.0 3.30e-01 94.6% 49.8%
3601210 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.62 54.0 3.32e-01 98.2% 44.3%
3968451 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.62 53.0 3.36e-01 94.6% 45.6%
3700490 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.62 53.0 3.26e-01 96.4% 45.9%
5030565 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.62 48.0 4.55e-01 87.5% 95.7%
3595344 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.62 52.0 3.15e-01 94.6% 45.1%
5014319 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 55.0 5.12e-01 98.2% 91.2%
3283334 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.61 52.0 3.81e-01 100.0% 81.8%
4010681 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 46.0 3.90e-01 82.1% 88.4%
3599659 206.1.3.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF7920 0.60 50.0 3.02e-01 100.0% 13.2%
4962687 4972.1.1.1 beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.60 51.0 4.02e-01 100.0% 60.0%
2774111 12.6.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.60 45.0 4.06e-01 82.1% 62.8%
4024234 2003.1.5.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.59 50.0 3.07e-01 96.4% 27.3%
3590243 6044.1.1.1 a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like › DUF1827 0.59 53.0 4.27e-01 100.0% 62.9%
3629240 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.59 46.0 3.83e-01 91.1% 100.0%
3769451 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 49.0 3.13e-01 100.0% 79.4%
4324652 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.58 49.0 3.24e-01 92.9% 27.1%
3672651 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 51.0 3.66e-01 100.0% 76.5%
3740323 101.1.9.6 alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.58 49.0 3.95e-01 98.2% 92.2%
4015358 7579.1.1.49 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › GCE_fung 0.57 49.0 3.03e-01 100.0% 27.9%
3599562 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.57 45.0 4.08e-01 96.4% 62.4%
3477110 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.57 50.0 3.49e-01 98.2% 74.4%
3988063 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 4.74e-01 100.0% 92.3%
3588002 298.1.1.20 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › YceM-like_C 0.57 49.0 3.45e-01 100.0% 67.0%
3593972 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.57 46.0 4.54e-01 89.3% 90.0%
3398591 210.1.2.0 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain 0.56 48.0 2.97e-01 98.2% 29.7%
3197602 101.1.9.6 alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.56 46.0 3.70e-01 100.0% 77.7%
4030698 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.55 48.0 4.02e-01 100.0% 73.0%
3618489 1.1.1.1 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.55 37.0 2.35e-01 71.4% 26.0%
3587134 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.54 42.0 4.25e-01 85.7% 89.1%
3603020 2.14.1.1 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.54 45.0 4.58e-01 100.0% 92.7%
184285 298.1.1.20 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › YceM-like_C 0.54 46.0 3.54e-01 100.0% 92.1%
3603228 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 42.0 3.71e-01 96.4% 61.1%
5018105 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.52 44.0 3.24e-01 100.0% 84.8%
3838919 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 44.0 3.36e-01 100.0% 42.1%