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NC_019931.1__YP_007238009.1__G177_gp31__00031

Bact-Vir

NC_019931.1__YP_007238009.1__G177_gp31__00031

Identity

Accession:
NC_019931 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 171-252
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fmnA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.75 53.0 5.27e-01 74.4% 97.7%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.68 50.0 5.09e-01 76.8% 79.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3750377 605.1.1.254 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MRVI1 0.86 60.0 6.09e-01 72.0% 93.8%
3465231 192.15.1.189 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Frigida 0.77 58.0 5.94e-01 79.3% 83.7%
5077460 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 53.0 5.73e-01 78.0% 91.2%
3974601 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.73 50.0 4.51e-01 78.0% 52.7%
5002330 205.1.1.33 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_10 0.68 51.0 4.17e-01 80.5% 75.5%
3627953 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 46.0 4.22e-01 80.5% 65.5%
D2 medium residues 104-170
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.77 52.0 5.25e-01 70.1% 72.1%
1l7vA00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.74 65.0 4.11e-01 97.0% 50.2%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.70 61.0 5.25e-01 100.0% 63.3%
1z9hA03 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 46.0 3.60e-01 88.1% 32.5%
2js9A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.66 55.0 5.20e-01 100.0% 77.8%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 46.0 4.06e-01 74.6% 51.0%
1sgmA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 57.0 4.21e-01 100.0% 47.8%
1a52A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.65 57.0 3.93e-01 100.0% 33.5%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.65 55.0 4.74e-01 100.0% 62.6%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.65 55.0 3.41e-01 97.0% 58.1%
2nq2A00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.65 54.0 3.61e-01 98.5% 52.9%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.65 49.0 3.94e-01 97.0% 39.6%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.63 55.0 4.40e-01 100.0% 65.2%
1y8qC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 53.0 3.41e-01 100.0% 20.3%
5fgzA02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.62 47.0 3.58e-01 83.6% 88.3%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 50.0 4.55e-01 94.0% 70.1%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 49.0 4.69e-01 97.0% 76.9%
5u9nB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 49.0 4.09e-01 89.6% 74.2%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 53.0 3.86e-01 100.0% 45.9%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 51.0 4.10e-01 100.0% 94.0%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 46.0 3.66e-01 86.6% 88.1%
3himA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 52.0 3.85e-01 100.0% 45.3%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 46.0 4.24e-01 85.1% 71.4%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 50.0 4.04e-01 100.0% 93.8%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.59 48.0 4.22e-01 91.0% 80.4%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 52.0 4.76e-01 98.5% 85.1%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 49.0 3.67e-01 100.0% 46.8%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.58 49.0 3.95e-01 98.5% 55.4%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.57 42.0 4.39e-01 88.1% 85.5%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 50.0 3.23e-01 97.0% 76.1%
3qkxB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 47.0 3.63e-01 100.0% 45.3%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 47.0 3.76e-01 100.0% 78.5%
1r1dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 47.0 3.30e-01 98.5% 46.7%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 47.0 3.82e-01 100.0% 93.8%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 47.0 3.84e-01 100.0% 91.4%
4uurA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 45.0 3.76e-01 92.5% 87.1%
1un8A02 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.55 45.0 3.42e-01 98.5% 56.2%
3vasA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 48.0 3.16e-01 97.0% 87.6%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 48.0 3.73e-01 100.0% 54.5%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 44.0 3.65e-01 100.0% 87.2%
3he0B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 45.0 3.45e-01 98.5% 43.8%
2rjiA00 1.10.1740.170 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Erythrocyte binding antigen 175 region VI 0.54 45.0 4.30e-01 98.5% 96.4%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.54 44.0 4.42e-01 98.5% 100.0%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.54 45.0 4.38e-01 100.0% 100.0%
7ml0M01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 40.0 3.80e-01 82.1% 68.3%
2iaiA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 46.0 3.69e-01 100.0% 54.4%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.53 43.0 3.76e-01 91.0% 76.4%
1euvA01 1.10.418.20 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › 0.52 39.0 3.43e-01 82.1% 77.1%
4uw9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 42.0 4.04e-01 97.0% 83.1%
2qupA00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.51 41.0 3.54e-01 94.0% 78.2%
4kkiA01 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 40.0 2.65e-01 88.1% 39.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227634 101.38.1.1 alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › C_tripleX 0.79 64.0 6.53e-01 98.5% 92.3%
3906775 3921.1.1.0 alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D 0.77 68.0 5.30e-01 100.0% 51.0%
4594465 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.76 67.0 5.97e-01 100.0% 78.9%
5022668 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.76 65.0 5.15e-01 97.0% 94.3%
3694079 101.1.2.290 alpha arrays › HTH › HTH › winged helix domain › DUF3759 0.74 64.0 5.37e-01 100.0% 79.2%
5048577 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.73 65.0 6.15e-01 100.0% 93.8%
3632302 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.72 50.0 4.75e-01 73.1% 62.5%
3845878 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.71 62.0 6.04e-01 100.0% 92.0%
3263245 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.70 57.0 5.47e-01 100.0% 78.2%
3632341 101.1.1.176 alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.70 54.0 5.49e-01 98.5% 86.2%
3316706 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 52.0 4.62e-01 80.6% 65.0%
3446100 3896.1.1.2 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › DUF92 0.69 59.0 4.06e-01 100.0% 39.6%
4952935 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.69 42.0 4.34e-01 86.6% 63.1%
3958441 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.69 61.0 4.99e-01 100.0% 62.4%
4392521 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.69 60.0 3.96e-01 100.0% 25.3%
3704777 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.68 56.0 4.41e-01 97.0% 87.5%
4158890 168.1.1.1 alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.68 58.0 4.19e-01 100.0% 40.5%
3704156 283.1.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.68 60.0 4.39e-01 100.0% 40.0%
4016179 371.1.1.0 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.68 60.0 4.90e-01 100.0% 63.2%
4247735 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.67 58.0 3.29e-01 100.0% 9.1%
4597483 5058.1.1.1 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1,MS_channel_1st 0.67 48.0 3.96e-01 74.6% 43.3%
4996484 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.67 55.0 4.32e-01 97.0% 94.4%
3725961 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.67 56.0 3.37e-01 95.5% 53.8%
3541292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 4.81e-01 100.0% 60.0%
4991095 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.66 56.0 4.39e-01 100.0% 52.9%
3922669 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.85e-01 100.0% 61.0%
5001603 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.65 56.0 5.16e-01 100.0% 74.4%
350072 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.65 54.0 5.10e-01 100.0% 77.8%
4027876 1198.1.1.0 alpha bundles › BTA121 › BTA121 › BTA121 0.65 54.0 4.26e-01 94.0% 82.1%
3640543 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.64 55.0 3.35e-01 100.0% 50.4%
3513623 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.64 53.0 4.04e-01 94.0% 83.0%
3244338 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 54.0 4.09e-01 100.0% 81.0%
3233966 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 52.0 3.95e-01 94.0% 82.4%
3511626 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 54.0 4.09e-01 100.0% 88.2%
3967002 3843.1.1.27 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › COX4_pro 0.62 47.0 4.47e-01 85.1% 78.8%
4934670 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.62 46.0 4.38e-01 82.1% 82.5%
4977379 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 49.0 4.80e-01 91.0% 86.7%
3999743 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.60 52.0 3.99e-01 98.5% 85.0%
3228605 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.60 51.0 3.81e-01 100.0% 36.2%
3513249 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 49.0 3.80e-01 100.0% 85.3%
4550256 604.12.1.76 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA 0.58 45.0 4.43e-01 88.1% 80.0%
3244587 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.58 49.0 3.99e-01 98.5% 54.1%
4961827 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.57 47.0 3.21e-01 92.5% 69.0%
3787217 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.56 47.0 3.65e-01 100.0% 89.1%
4168740 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.55 45.0 3.49e-01 100.0% 57.8%
3615254 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 2.95e-01 100.0% 40.0%
1284710 235.1.1.25 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › T6SS_VgrG3-like_C 0.52 41.0 3.07e-01 94.0% 49.0%
4024049 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.50 42.0 4.15e-01 97.0% 89.3%