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YP_007348266.1

Arc-Vir

NC_020077__YP_007348266.1__STSV2-22__00022

Identity

Accession:: NC_020077 ↗
Protein ID:: YP_007348266.1 ↗
Kingdom:: archaea

Quality

87.9 mean pLDDT

Taxonomy

Bicaudaviridae› Sulfolobus_virus_STSV2

TaxID: 1123964

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-103

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01402.28 best	RHH_1	23.0	7.80e-05	41.8%	85.4%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7x4eA01	1.10.1220.160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE	0.78	72.0	6.77e-01	100.0%	92.5%
1dgjA04	3.30.365.10	Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain	0.68	34.0	2.81e-01	82.4%	27.8%
1p2xA00	1.10.418.10	Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain	0.60	42.0	3.55e-01	73.6%	96.2%
3rh2A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.59	47.0	3.70e-01	87.9%	69.4%
1d0xA04	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.57	33.0	2.90e-01	100.0%	38.0%
4b1bA00	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.55	40.0	2.59e-01	76.9%	74.6%
2cz2A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	42.0	3.80e-01	83.5%	69.0%
3sqnA02	1.10.1790.40	Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD ›	0.54	39.0	3.61e-01	89.0%	58.5%
2qrjA02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.53	37.0	2.95e-01	72.5%	91.6%
2kseA00	1.20.5.1040	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec.	0.52	31.0	3.30e-01	84.6%	67.5%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4640858	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.61	29.0	3.25e-01	95.6%	56.0%
7178	873.1.1.5 ↗	a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB	0.57	43.0	3.39e-01	78.0%	80.9%
3807400	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.57	39.0	3.66e-01	72.5%	96.5%
3499369	4983.1.1.1 ↗	alpha superhelices › Indoleamine 2,3-dioxygenase N-terminal subdomain › Indoleamine 2,3-dioxygenase N-terminal subdomain › Indoleamine 2,3-dioxygenase N-terminal subdomain › IDO	0.55	38.0	3.75e-01	70.3%	81.1%
3630365	109.4.1.1465 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IPO11	0.55	44.0	2.57e-01	87.9%	22.2%
3284349	101.1.2.735 ↗	alpha arrays › HTH › HTH › winged helix domain › PspC	0.55	41.0	4.24e-01	79.1%	88.2%
3937183	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.53	42.0	3.56e-01	84.6%	68.3%
3548686	109.4.1.162 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192	0.52	41.0	2.91e-01	87.9%	72.9%
3306367	184.1.1.0 ↗	alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N	0.51	36.0	3.63e-01	72.5%	77.8%