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YP_007348272.1
Arc-VirNC_020077__YP_007348272.1__STSV2-28__00028
Identity
- Accession:
- NC_020077 ↗
- Protein ID:
- YP_007348272.1 ↗
- Kingdom:
- archaea
Quality
75.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-86
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f9wA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.69 | 60.0 | 4.97e-01 | 96.0% | 98.5% |
| 2w40A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 55.0 | 3.80e-01 | 90.7% | 97.6% |
| 4bc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 56.0 | 3.73e-01 | 96.0% | 93.0% |
| 2itmA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 53.0 | 3.74e-01 | 90.7% | 96.7% |
| 2ap1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 56.0 | 4.53e-01 | 96.0% | 96.4% |
| 2zgoA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 52.0 | 4.02e-01 | 89.3% | 54.5% |
| 3ll3B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 52.0 | 3.70e-01 | 90.7% | 95.9% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 42.0 | 3.59e-01 | 100.0% | 42.1% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.63 | 54.0 | 4.13e-01 | 100.0% | 63.1% |
| 4qxaB00 | 2.30.29.230 | Mainly Beta › Roll › PH-domain like › | 0.62 | 55.0 | 4.45e-01 | 100.0% | 51.7% |
| 5f7pA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 54.0 | 4.57e-01 | 96.0% | 98.4% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.62 | 42.0 | 4.40e-01 | 100.0% | 78.8% |
| 1b63A01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.62 | 38.0 | 2.73e-01 | 100.0% | 21.3% |
| 3u3gA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.61 | 50.0 | 4.11e-01 | 90.7% | 86.4% |
| 4htlA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 51.0 | 4.70e-01 | 96.0% | 96.0% |
| 4v19S00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.60 | 51.0 | 4.21e-01 | 98.7% | 67.8% |
| 1xc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 51.0 | 4.62e-01 | 96.0% | 96.1% |
| 3htvA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 51.0 | 4.48e-01 | 96.0% | 91.9% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 53.0 | 3.40e-01 | 98.7% | 99.4% |
| 4o5fA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 46.0 | 3.96e-01 | 88.0% | 100.0% |
| 3t69A01 | 3.30.420.300 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain | 0.58 | 48.0 | 4.84e-01 | 92.0% | 89.3% |
| 8b4hA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 47.0 | 3.73e-01 | 90.7% | 69.8% |
| 2i0rA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 50.0 | 3.27e-01 | 98.7% | 98.8% |
| 2f9wA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 46.0 | 3.96e-01 | 86.7% | 100.0% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 49.0 | 4.53e-01 | 97.3% | 95.9% |
| 1t11A03 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 38.0 | 3.52e-01 | 84.0% | 54.6% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 38.0 | 3.50e-01 | 100.0% | 54.5% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 38.0 | 3.71e-01 | 100.0% | 65.1% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 39.0 | 2.69e-01 | 98.7% | 21.2% |
| 1fbqA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.87e-01 | 100.0% | 70.5% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.53 | 43.0 | 3.21e-01 | 92.0% | 96.5% |
| 5c4iE01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.52 | 38.0 | 2.83e-01 | 100.0% | 28.1% |
| 2g0qA01 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.52 | 43.0 | 3.81e-01 | 93.3% | 95.7% |
| 1lk5A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 34.0 | 3.43e-01 | 100.0% | 64.6% |
| 7jl1B01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.52 | 40.0 | 3.29e-01 | 86.7% | 51.7% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.52 | 37.0 | 3.35e-01 | 76.0% | 94.4% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 40.0 | 2.75e-01 | 89.3% | 92.0% |
| 1bdyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 42.0 | 3.58e-01 | 89.3% | 58.5% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.78e-01 | 100.0% | 62.3% |
| 3up9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 43.0 | 3.63e-01 | 100.0% | 72.5% |
| 2qndA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 36.0 | 3.56e-01 | 100.0% | 71.2% |
| 2g8yA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.51 | 43.0 | 3.20e-01 | 100.0% | 91.7% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.74e-01 | 100.0% | 63.2% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3563547 | 220.1.1.27 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD | 0.78 | 58.0 | 4.84e-01 | 96.0% | 47.2% |
| 3317211 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.71 | 66.0 | 4.80e-01 | 100.0% | 81.4% |
| 3966083 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.71 | 59.0 | 5.12e-01 | 90.7% | 90.4% |
| 4650779 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.70 | 43.0 | 3.56e-01 | 98.7% | 36.8% |
| 3940997 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.70 | 55.0 | 4.54e-01 | 100.0% | 47.4% |
| 3941411 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.67 | 60.0 | 4.61e-01 | 100.0% | 55.9% |
| 3211283 | 220.1.1.27 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD | 0.67 | 60.0 | 4.58e-01 | 100.0% | 52.6% |
| 4420316 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.67 | 56.0 | 4.05e-01 | 90.7% | 75.5% |
| 3413365 | 220.1.1.27 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD | 0.66 | 58.0 | 4.55e-01 | 100.0% | 46.3% |
| 3890539 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.64 | 40.0 | 4.43e-01 | 92.0% | 78.3% |
| 3602236 | 284.1.3.3 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 | 0.64 | 53.0 | 4.92e-01 | 92.0% | 80.0% |
| 3351393 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 53.0 | 4.90e-01 | 90.7% | 85.3% |
| 4089497 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.63 | 55.0 | 4.47e-01 | 96.0% | 97.1% |
| 4381129 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.63 | 52.0 | 4.21e-01 | 89.3% | 85.6% |
| 3290386 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.62 | 55.0 | 4.35e-01 | 98.7% | 85.8% |
| 5830 | 330.7.1.1 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › DUF905 | 0.62 | 42.0 | 4.40e-01 | 100.0% | 78.8% |
| 140602 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.62 | 52.0 | 4.49e-01 | 93.3% | 89.1% |
| 3429092 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.62 | 51.0 | 3.55e-01 | 89.3% | 94.7% |
| 5043655 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 54.0 | 4.37e-01 | 96.0% | 82.1% |
| 4031988 | 3769.1.1.0 ↗ | 0.62 | 30.0 | 3.82e-01 | 100.0% | 77.8% | |
| 5079230 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.61 | 47.0 | 4.17e-01 | 100.0% | 58.1% |
| 4660064 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.61 | 50.0 | 4.20e-01 | 90.7% | 92.3% |
| 4050569 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.59 | 47.0 | 3.94e-01 | 89.3% | 88.1% |
| 4513468 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.58 | 48.0 | 4.03e-01 | 90.7% | 88.3% |
| 3639807 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.58 | 50.0 | 3.06e-01 | 100.0% | 18.8% |
| 3948638 | 223.8.1.4 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 | 0.58 | 44.0 | 3.40e-01 | 100.0% | 38.1% |
| 4183381 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.57 | 49.0 | 4.49e-01 | 96.0% | 98.0% |
| 3630687 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 39.0 | 3.05e-01 | 70.7% | 35.3% |
| 4988427 | 2003.1.5.26 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 | 0.57 | 46.0 | 2.98e-01 | 88.0% | 84.8% |
| 4956002 | 2484.4.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like | 0.57 | 48.0 | 4.30e-01 | 96.0% | 91.8% |
| 3922536 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 41.0 | 3.14e-01 | 96.0% | 36.1% |
| 3575992 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 39.0 | 3.79e-01 | 100.0% | 64.7% |
| 3917937 | 220.1.1.173 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK | 0.56 | 46.0 | 3.97e-01 | 88.0% | 84.3% |
| 4974688 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.55 | 37.0 | 3.87e-01 | 100.0% | 75.7% |
| 3799509 | 225.1.1.7 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 | 0.54 | 48.0 | 3.51e-01 | 100.0% | 79.0% |
| 3519969 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 37.0 | 3.55e-01 | 100.0% | 61.1% |
| 4010374 | 223.1.1.156 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES3 | 0.53 | 42.0 | 3.63e-01 | 100.0% | 54.2% |
| 4269457 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.53 | 45.0 | 3.83e-01 | 100.0% | 86.6% |
| 4199063 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.53 | 40.0 | 3.24e-01 | 85.3% | 85.0% |
| 3992069 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 38.0 | 2.91e-01 | 100.0% | 32.2% |
| 3188973 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.52 | 43.0 | 3.09e-01 | 93.3% | 69.8% |
| None | — | 0.52 | 41.0 | 3.14e-01 | 90.7% | 84.5% | |
| 3684565 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 43.0 | 3.50e-01 | 100.0% | 78.7% |
| 2981912 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.50 | 43.0 | 3.75e-01 | 100.0% | 62.6% |
| 3839740 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.50 | 36.0 | 3.03e-01 | 92.0% | 41.4% |
| 3961277 | 3280.1.1.1 ↗ | a/b three-layered sandwiches › C-terminal domain in arabinosyltransferase C › C-terminal domain in arabinosyltransferase C › C-terminal domain in arabinosyltransferase C › Arabino_trans_C | 0.50 | 44.0 | 4.03e-01 | 100.0% | 87.0% |