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NC_020083.1__YP_007349012.1__G646_gp033__00033

Bact-Vir

NC_020083.1__YP_007349012.1__G646_gp033__00033

Identity

Accession:
NC_020083 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Miltonvirus› Serratia_phage_phiMAM1

TaxID: 1262513

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: rep: MW394388.1__QQV91660.1__vBKpPFBKp27_092__00092__D2-92
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.80 42.0 2.85e-01 80.0% 15.8%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.76 42.0 2.84e-01 81.2% 15.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 42.0 4.71e-01 100.0% 81.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 41.0 4.53e-01 100.0% 77.3%
2c2iA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 51.0 4.15e-01 78.8% 89.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 42.0 4.58e-01 100.0% 78.3%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.63 37.0 4.46e-01 77.6% 100.0%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 38.0 3.48e-01 81.2% 46.8%
4b0bB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 45.0 3.55e-01 78.8% 66.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 38.0 4.05e-01 98.8% 78.9%
3khpD01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 43.0 3.72e-01 80.0% 88.2%
2oiwA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 48.0 4.18e-01 92.9% 95.5%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.57 33.0 3.68e-01 100.0% 75.0%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 51.0 4.07e-01 100.0% 57.6%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 42.0 3.09e-01 100.0% 28.7%
3lw3B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 42.0 3.63e-01 81.2% 69.3%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 33.0 3.63e-01 100.0% 73.8%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 38.0 3.51e-01 100.0% 53.5%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.55 38.0 3.96e-01 100.0% 77.2%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 42.0 3.57e-01 82.4% 68.5%
4oleC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.38e-01 70.6% 79.0%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 40.0 3.48e-01 80.0% 77.1%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.54 49.0 3.81e-01 98.8% 69.3%
4qhzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 47.0 3.48e-01 100.0% 54.9%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 48.0 3.95e-01 100.0% 77.3%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 4.17e-01 84.7% 82.4%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.86e-01 100.0% 83.3%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.52 36.0 3.16e-01 97.6% 48.8%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 37.0 3.09e-01 76.5% 98.7%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 36.0 3.72e-01 76.5% 89.2%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.94e-01 100.0% 90.5%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 3.61e-01 100.0% 58.4%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.50 44.0 3.60e-01 100.0% 59.5%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 45.0 3.64e-01 98.8% 69.1%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 35.0 2.51e-01 72.9% 30.8%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.50 36.0 3.82e-01 78.8% 85.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3234839 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.79 41.0 2.74e-01 80.0% 14.3%
3626644 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.78 42.0 2.85e-01 81.2% 15.9%
3479746 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.78 42.0 2.81e-01 80.0% 15.1%
3500787 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.77 41.0 2.81e-01 80.0% 16.1%
3483990 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.77 41.0 2.75e-01 80.0% 15.0%
4025190 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.68 38.0 4.55e-01 81.2% 83.6%
5051166 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.68 52.0 4.22e-01 80.0% 91.3%
4424299 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.67 53.0 4.23e-01 83.5% 90.0%
3879303 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.66 50.0 5.20e-01 98.8% 87.5%
4116159 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.66 51.0 5.02e-01 98.8% 78.9%
4180235 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.64 44.0 4.54e-01 94.1% 75.0%
3852952 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.62 47.0 4.85e-01 98.8% 87.5%
4987319 1036.1.1.2 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 0.61 45.0 4.14e-01 81.2% 60.0%
5082037 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.61 32.0 3.15e-01 78.8% 44.7%
3954938 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 37.0 4.13e-01 94.1% 78.5%
5036880 330.1.1.35 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.58 43.0 4.65e-01 98.8% 94.3%
3933099 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.58 44.0 4.47e-01 100.0% 81.2%
3329783 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 39.0 3.78e-01 100.0% 62.1%
4770305 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.58 34.0 3.81e-01 100.0% 76.6%
3284646 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.58 35.0 2.58e-01 81.2% 20.8%
2490256 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.58 34.0 3.75e-01 100.0% 74.2%
861 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.57 51.0 4.47e-01 100.0% 76.6%
3824181 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 36.0 4.04e-01 80.0% 91.7%
3670595 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 38.0 3.70e-01 100.0% 64.2%
3830643 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.55 37.0 3.69e-01 70.6% 68.9%
3733732 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 3.14e-01 88.2% 40.8%
4652688 504.1.1.1 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.54 44.0 3.78e-01 90.6% 65.0%
3630669 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.54 43.0 2.79e-01 88.2% 50.6%
3286033 11.1.6.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain 0.54 38.0 3.20e-01 76.5% 84.4%
3272573 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.53 39.0 4.05e-01 100.0% 88.0%
5032125 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 31.0 2.24e-01 85.9% 17.7%
4955354 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.53 36.0 2.54e-01 70.6% 22.6%
5054433 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 31.0 3.59e-01 80.0% 96.0%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.51 35.0 2.88e-01 71.8% 82.3%
6409 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.50 45.0 3.64e-01 98.8% 69.1%