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NC_020083.1__YP_007349116.1__G646_gp137__00137
Bact-VirNC_020083.1__YP_007349116.1__G646_gp137__00137
Identity
- Accession:
- NC_020083 ↗
- Kingdom:
- phage
Quality
71.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Miltonvirus›
Serratia_phage_phiMAM1
TaxID: 1262513
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-145
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.67 | 46.0 | 4.91e-01 | 83.7% | 81.7% |
| 4g1iA02 | 3.30.300.170 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.65 | 35.0 | 4.68e-01 | 79.3% | 100.0% |
| 4g1iA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 35.0 | 4.51e-01 | 85.2% | 100.0% |
| 3bypA00 | 3.30.70.1350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain | 0.64 | 38.0 | 4.76e-01 | 79.3% | 98.8% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.63 | 45.0 | 5.09e-01 | 81.5% | 95.2% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.62 | 34.0 | 3.69e-01 | 76.3% | 61.7% |
| 4ekfA00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.61 | 43.0 | 3.90e-01 | 73.3% | 99.0% |
| 1u9dA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.61 | 43.0 | 4.54e-01 | 90.4% | 80.3% |
| 2nlvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.60 | 44.0 | 4.77e-01 | 81.5% | 90.2% |
| 1hh2P04 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.59 | 31.0 | 4.12e-01 | 74.8% | 100.0% |
| 4m1aA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.59 | 43.0 | 4.76e-01 | 91.9% | 95.3% |
| 3w5xA00 | 3.30.70.1350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain | 0.58 | 34.0 | 4.26e-01 | 74.8% | 97.5% |
| 3c0kA02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.58 | 37.0 | 4.04e-01 | 77.8% | 78.9% |
| 1uwdA00 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.56 | 39.0 | 4.41e-01 | 97.8% | 96.1% |
| 3pbkA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.56 | 37.0 | 4.11e-01 | 81.5% | 85.2% |
| 6kwzA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 36.0 | 4.15e-01 | 81.5% | 91.8% |
| 7whgG02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 34.0 | 4.01e-01 | 76.3% | 90.2% |
| 2b78A02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.55 | 34.0 | 3.83e-01 | 74.8% | 80.4% |
| 2hqyA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 39.0 | 4.00e-01 | 72.6% | 93.8% |
| 2cxcA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.55 | 29.0 | 3.71e-01 | 70.4% | 95.7% |
| 3ux3A01 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.54 | 38.0 | 4.28e-01 | 93.3% | 100.0% |
| 3v97A03 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.53 | 33.0 | 4.04e-01 | 76.3% | 98.8% |
| 7c2gG01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 34.0 | 4.04e-01 | 84.4% | 100.0% |
| 7whfC02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 33.0 | 3.79e-01 | 76.3% | 86.0% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 40.0 | 4.18e-01 | 81.5% | 88.5% |
| 1j72A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 39.0 | 4.23e-01 | 91.9% | 96.3% |
| 3kxwA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 40.0 | 4.15e-01 | 84.4% | 87.9% |
| 3fg6A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 36.0 | 4.17e-01 | 89.6% | 100.0% |
| 4dcuA03 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 31.0 | 3.83e-01 | 77.8% | 100.0% |
| 1cfyA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 39.0 | 4.02e-01 | 81.5% | 85.0% |
| 4gs5A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.51 | 37.0 | 4.06e-01 | 82.2% | 96.2% |
| 6p66D01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.51 | 28.0 | 3.15e-01 | 77.8% | 67.0% |
| 1nyrA03 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 46.0 | 3.51e-01 | 100.0% | 84.2% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 39.0 | 3.79e-01 | 82.2% | 80.3% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3174890 | 316.1.1.73 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF29692 | 0.70 | 39.0 | 4.72e-01 | 81.5% | 82.2% |
| 3839723 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.66 | 40.0 | 4.98e-01 | 75.6% | 100.0% |
| 4934708 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.64 | 39.0 | 4.70e-01 | 80.0% | 91.1% |
| 5070921 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.63 | 40.0 | 4.81e-01 | 88.1% | 97.8% |
| 2855729 | 327.18.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › Ribosomal_S7e | 0.62 | 33.0 | 4.06e-01 | 71.9% | 83.7% |
| 3539067 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.62 | 37.0 | 4.55e-01 | 75.6% | 98.8% |
| 5073648 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.62 | 37.0 | 4.38e-01 | 80.7% | 88.8% |
| 4975326 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.62 | 37.0 | 4.60e-01 | 77.0% | 100.0% |
| 4007060 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.61 | 37.0 | 4.35e-01 | 80.7% | 86.3% |
| 5078678 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.60 | 41.0 | 4.52e-01 | 84.4% | 87.6% |
| 4033371 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.60 | 37.0 | 4.35e-01 | 81.5% | 87.4% |
| 4989684 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.60 | 33.0 | 4.17e-01 | 71.1% | 94.6% |
| 4422829 | 327.5.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 | 0.60 | 37.0 | 4.24e-01 | 80.0% | 85.3% |
| 4984735 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.60 | 41.0 | 4.18e-01 | 83.0% | 69.6% |
| 3994259 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.60 | 43.0 | 3.61e-01 | 74.1% | 72.8% |
| 4100012 | 327.13.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAH | 0.60 | 35.0 | 3.72e-01 | 77.0% | 64.4% |
| 4947564 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.60 | 34.0 | 4.35e-01 | 77.8% | 100.0% |
| 3450898 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.60 | 36.0 | 4.44e-01 | 75.6% | 100.0% |
| 4997310 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.60 | 37.0 | 4.34e-01 | 81.5% | 89.4% |
| 4948129 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 38.0 | 4.22e-01 | 82.2% | 81.9% |
| 4949378 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.59 | 40.0 | 4.64e-01 | 96.3% | 96.8% |
| 3524761 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.59 | 38.0 | 4.45e-01 | 86.7% | 95.6% |
| 3743715 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.59 | 35.0 | 4.41e-01 | 76.3% | 100.0% |
| 5011218 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.59 | 34.0 | 4.13e-01 | 80.7% | 89.4% |
| 3202021 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.59 | 41.0 | 4.62e-01 | 83.7% | 96.0% |
| 3693032 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.58 | 38.0 | 3.88e-01 | 83.7% | 68.0% |
| 5078640 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.58 | 37.0 | 4.21e-01 | 80.7% | 86.0% |
| 1421547 | 327.10.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › Ribosomal_S7e | 0.58 | 35.0 | 4.12e-01 | 85.9% | 88.6% |
| 5014624 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.58 | 38.0 | 4.27e-01 | 81.5% | 85.6% |
| 4940209 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 32.0 | 3.79e-01 | 87.4% | 76.8% |
| 4382439 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.58 | 37.0 | 4.40e-01 | 86.7% | 96.7% |
| 4992530 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.58 | 38.0 | 4.27e-01 | 82.2% | 86.5% |
| 4933516 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.58 | 31.0 | 3.91e-01 | 79.3% | 94.3% |
| 4996505 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.57 | 35.0 | 4.25e-01 | 80.7% | 100.0% |
| 5053911 | 327.11.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 | 0.57 | 32.0 | 4.00e-01 | 80.0% | 96.0% |
| 4216095 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.57 | 38.0 | 4.19e-01 | 82.2% | 86.7% |
| 3602634 | 327.11.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 | 0.56 | 31.0 | 3.93e-01 | 79.3% | 100.0% |
| 2643930 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.56 | 36.0 | 4.10e-01 | 82.2% | 88.0% |
| 2565990 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.55 | 36.0 | 4.15e-01 | 81.5% | 91.8% |
| 4943620 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.55 | 35.0 | 4.06e-01 | 81.5% | 91.6% |
| 3225252 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.54 | 35.0 | 3.90e-01 | 80.7% | 85.0% |
| 3493207 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.54 | 36.0 | 4.23e-01 | 80.7% | 100.0% |
| 5052801 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.54 | 35.0 | 3.99e-01 | 81.5% | 88.0% |
| 4260704 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.53 | 35.0 | 3.98e-01 | 81.5% | 92.6% |
| 4996818 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.53 | 40.0 | 4.09e-01 | 83.7% | 80.7% |
| 3705025 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.53 | 40.0 | 4.06e-01 | 80.7% | 80.0% |
| 3268828 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.52 | 35.0 | 3.80e-01 | 80.7% | 80.9% |
| 3475197 | 323.1.1.31 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-dom_DIP2-like | 0.51 | 37.0 | 2.81e-01 | 85.2% | 30.8% |
| 3679617 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.51 | 35.0 | 4.06e-01 | 74.1% | 100.0% |
| 3284171 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 36.0 | 3.52e-01 | 73.3% | 84.7% |
| 3596245 | 232.1.1.0 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein | 0.51 | 39.0 | 3.05e-01 | 80.7% | 97.9% |
| 3346804 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.50 | 37.0 | 4.13e-01 | 92.6% | 98.1% |
| 3773397 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.50 | 37.0 | 4.02e-01 | 91.9% | 92.7% |
| 4223070 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.50 | 34.0 | 3.80e-01 | 82.2% | 93.0% |