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YP_007378948.1

Arc-Vir

NC_020158__YP_007378948.1__HVTV1-42__00042

Identity

Accession:
NC_020158 ↗
Protein ID:
YP_007378948.1 ↗
Kingdom:
archaea

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Druskaviridae› Tredecimvirus› Haloarcula_vallismortis_tailed_virus_1

TaxID: 1262528

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-87
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lshA04 2.20.80.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 0.64 49.0 3.47e-01 82.1% 76.5%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.63 55.0 5.23e-01 98.8% 84.8%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 5.08e-01 86.9% 92.1%
3zi1A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 41.0 3.46e-01 73.8% 39.3%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 47.0 3.25e-01 83.3% 48.0%
3azoA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 45.0 3.11e-01 79.8% 45.6%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 42.0 2.99e-01 73.8% 33.6%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 49.0 3.34e-01 92.9% 57.6%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 33.0 3.16e-01 70.2% 47.1%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 33.0 3.12e-01 70.2% 48.0%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 4.03e-01 84.5% 94.6%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 43.0 2.94e-01 81.0% 39.7%
1kdgA02 3.30.410.10 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › Cholesterol Oxidase; domain 2 0.57 49.0 3.80e-01 100.0% 84.3%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 46.0 3.55e-01 86.9% 47.5%
3weoA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.56 43.0 3.09e-01 83.3% 90.3%
2hdwA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 47.0 3.53e-01 96.4% 90.4%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 46.0 4.70e-01 95.2% 97.5%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.55 49.0 4.43e-01 100.0% 71.8%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 46.0 3.16e-01 94.0% 85.4%
3pzfA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 45.0 3.53e-01 89.3% 100.0%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 43.0 3.98e-01 88.1% 75.4%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 47.0 4.05e-01 100.0% 75.0%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.77e-01 86.9% 94.4%
3kb5A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 41.0 3.15e-01 81.0% 58.0%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.54 48.0 4.31e-01 100.0% 70.8%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 3.02e-01 90.5% 46.2%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.53 45.0 3.67e-01 97.6% 66.7%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.53 45.0 3.80e-01 100.0% 96.8%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 4.11e-01 89.3% 94.4%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.91e-01 95.2% 36.6%
1lb6A00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 40.0 3.31e-01 83.3% 80.6%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 2.87e-01 91.7% 51.2%
8jj7A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 39.0 2.77e-01 84.5% 88.6%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.05e-01 94.0% 69.4%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 41.0 2.73e-01 90.5% 42.5%
1y4wA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 41.0 2.71e-01 88.1% 32.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938106 9.15.1.0 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 0.67 55.0 4.64e-01 90.5% 84.1%
3927151 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 45.0 3.29e-01 75.0% 27.1%
3497302 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 48.0 3.96e-01 81.0% 45.7%
4940923 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 49.0 5.08e-01 86.9% 87.5%
4649438 331.10.1.2 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › AdoMet_dc 0.64 57.0 4.04e-01 100.0% 66.7%
3484227 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.63 55.0 4.46e-01 100.0% 60.6%
5083024 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 46.0 2.91e-01 79.8% 19.1%
3515197 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.61 53.0 4.31e-01 100.0% 61.2%
4299844 223.1.1.135 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Sensor_TM1, Stimulus_sens_1 0.61 44.0 3.51e-01 76.2% 73.5%
3593382 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 50.0 3.13e-01 88.1% 59.5%
5048392 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.61 48.0 3.34e-01 85.7% 43.9%
3608162 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.60 54.0 4.35e-01 100.0% 76.4%
5078664 4018.1.1.0 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases 0.60 53.0 4.57e-01 98.8% 94.8%
3860829 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 52.0 4.08e-01 100.0% 84.7%
3881236 11.1.1.209 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17R_fnIII_D2 0.59 42.0 3.97e-01 73.8% 88.0%
3490300 243.4.1.6 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › Radial_spoke 0.59 48.0 3.75e-01 92.9% 54.0%
3287004 7579.1.1.17 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S15 0.58 44.0 3.01e-01 79.8% 38.3%
418498 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.58 50.0 4.19e-01 100.0% 74.4%
3891434 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.58 50.0 4.32e-01 100.0% 79.3%
3187098 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.58 48.0 3.18e-01 92.9% 38.3%
279848 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.57 44.0 2.92e-01 84.5% 46.9%
3702988 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 47.0 4.49e-01 95.2% 79.0%
5019648 298.2.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like 0.57 47.0 4.07e-01 94.0% 90.0%
3818311 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.57 49.0 4.07e-01 100.0% 75.0%
None — 0.57 42.0 2.77e-01 79.8% 33.3%
3178372 10.1.1.3 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin 0.57 42.0 3.01e-01 81.0% 58.3%
4346250 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 48.0 4.17e-01 100.0% 83.6%
3232806 216.1.1.26 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 0.56 47.0 4.05e-01 100.0% 96.0%
3409432 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.56 47.0 3.04e-01 92.9% 48.7%
3395896 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.56 47.0 3.05e-01 92.9% 49.9%
3786904 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.56 44.0 2.85e-01 85.7% 40.0%
3177528 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.55 44.0 2.83e-01 85.7% 32.5%
5044976 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.55 43.0 3.05e-01 86.9% 39.7%
3638762 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.55 47.0 3.24e-01 97.6% 45.5%
3222003 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.55 47.0 3.10e-01 97.6% 96.1%
3808882 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.55 46.0 3.77e-01 98.8% 74.3%
3497311 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 47.0 3.19e-01 98.8% 57.9%
4262036 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.54 42.0 2.79e-01 85.7% 50.9%
3413759 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 47.0 3.13e-01 97.6% 35.9%
3610755 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 45.0 4.09e-01 92.9% 78.3%
3551728 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.53 44.0 2.90e-01 92.9% 50.1%
3730099 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 39.0 4.14e-01 90.5% 90.5%
4101190 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 40.0 4.17e-01 89.3% 90.7%
3684661 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.53 42.0 3.65e-01 89.3% 54.3%
3487083 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.52 39.0 2.57e-01 79.8% 46.2%
3221077 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 39.0 4.00e-01 89.3% 83.7%
3938972 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 40.0 4.22e-01 91.7% 93.3%
3489562 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.52 44.0 2.81e-01 90.5% 96.2%
6679 274.1.1.12 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.52 42.0 3.51e-01 91.7% 56.6%
3188398 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 44.0 3.41e-01 100.0% 76.7%
4937095 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 43.0 3.92e-01 94.0% 87.0%
4140206 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 38.0 3.85e-01 89.3% 80.0%
4539032 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.51 41.0 3.36e-01 92.9% 90.9%
3443030 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 39.0 4.05e-01 88.1% 95.0%
3219425 5.1.3.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.50 41.0 3.62e-01 90.5% 80.8%