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YP_007379046.1

Arc-Vir

NC_020158__YP_007379046.1__HVTV1-141__00140

Identity

Accession:
NC_020158 ↗
Protein ID:
YP_007379046.1 ↗
Kingdom:
archaea

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Druskaviridae› Tredecimvirus› Haloarcula_vallismortis_tailed_virus_1

TaxID: 1262528

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-71
PDB
Domain cluster: rep: IMGVR_UViG_2728369221_000001-2728369221-2729668422__D10-81
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.84 43.0 3.51e-01 91.1% 29.8%
2nr9A00 1.20.1540.10 Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like 0.81 74.0 5.00e-01 100.0% 74.0%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.80 55.0 5.00e-01 71.4% 71.2%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.77 53.0 4.39e-01 71.4% 50.5%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.77 52.0 4.01e-01 100.0% 34.5%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.76 52.0 4.50e-01 76.8% 48.8%
4irnA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.75 56.0 4.36e-01 80.4% 66.4%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.72 49.0 4.83e-01 71.4% 78.7%
2f2gA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.72 57.0 3.81e-01 87.5% 42.8%
2etnB01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.71 51.0 4.56e-01 75.0% 64.5%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.71 50.0 5.02e-01 75.0% 75.9%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.70 51.0 4.57e-01 76.8% 61.8%
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.69 57.0 5.60e-01 94.6% 93.3%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.69 47.0 3.37e-01 71.4% 26.2%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.69 58.0 3.96e-01 100.0% 25.8%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.68 50.0 4.05e-01 76.8% 84.8%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 56.0 4.72e-01 92.9% 94.6%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 56.0 4.51e-01 92.9% 91.5%
1k90B03 1.20.140.60 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.66 46.0 3.67e-01 75.0% 66.1%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.66 52.0 3.53e-01 85.7% 61.4%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 42.0 3.13e-01 94.6% 27.0%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 47.0 3.84e-01 78.6% 48.0%
1n1fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 54.0 3.91e-01 94.6% 53.6%
4logB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.63 52.0 3.43e-01 91.1% 50.4%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 45.0 4.13e-01 75.0% 67.6%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.62 41.0 3.73e-01 73.2% 50.0%
1lujB01 1.10.10.490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT 0.61 45.0 4.61e-01 78.6% 94.3%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.61 42.0 3.83e-01 71.4% 65.3%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.61 44.0 4.00e-01 76.8% 98.7%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 49.0 3.82e-01 89.3% 74.4%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 51.0 3.71e-01 92.9% 53.9%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.60 45.0 4.03e-01 83.9% 73.5%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.58 47.0 3.86e-01 89.3% 58.4%
1xg7A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.57 46.0 3.48e-01 91.1% 76.2%
1hbkA00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.57 42.0 3.68e-01 80.4% 56.2%
1exzB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 49.0 3.74e-01 100.0% 60.0%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.56 45.0 3.35e-01 94.6% 75.5%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 49.0 4.25e-01 100.0% 86.2%
2mjfB00 1.20.1440.260 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.54 43.0 3.63e-01 87.5% 74.7%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 41.0 2.95e-01 100.0% 59.0%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 44.0 3.31e-01 98.2% 86.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4407662 6028.1.1.1 ↗ alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor › RMF 0.93 75.0 7.28e-01 83.9% 83.3%
4673 192.7.1.4 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.80 55.0 5.18e-01 71.4% 78.8%
3386554 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 55.0 4.94e-01 71.4% 65.3%
3784738 3755.4.1.43 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Ran-binding 0.79 54.0 3.87e-01 71.4% 64.0%
3589137 192.7.1.4 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.78 56.0 5.15e-01 75.0% 70.0%
4185385 605.2.1.6 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Val_tRNA-synt_C 0.76 54.0 5.00e-01 75.0% 68.6%
3505608 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.76 54.0 4.86e-01 75.0% 64.0%
4334017 601.1.1.43 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Serendipity_A 0.76 53.0 4.08e-01 73.2% 40.0%
4181677 192.29.1.272 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Val_tRNA-synt_C 0.75 53.0 4.92e-01 75.0% 68.6%
3656317 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.71 61.0 4.13e-01 100.0% 70.0%
3598135 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.70 58.0 5.09e-01 92.9% 91.8%
3786619 103.4.1.2 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.70 48.0 3.97e-01 71.4% 46.3%
3743047 604.5.1.28 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TBCC_N 0.69 57.0 4.91e-01 89.3% 97.6%
4836886 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.69 59.0 5.13e-01 96.4% 98.9%
3375600 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.68 58.0 4.96e-01 94.6% 91.1%
3056394 1176.1.1.1 ↗ alpha arrays › Nitrogenase vanadium-iron protein delta chain › Nitrogenase vanadium-iron protein delta chain › Nitrogenase vanadium-iron protein delta chain › AnfG_VnfG 0.67 51.0 4.16e-01 89.3% 45.4%
3491689 604.1.1.159 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMEM120A-B 0.67 57.0 4.37e-01 92.9% 95.0%
3167928 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.66 50.0 3.77e-01 82.1% 83.0%
4123079 4168.1.1.0 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain 0.66 50.0 5.04e-01 82.1% 92.7%
3730497 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.65 58.0 4.65e-01 100.0% 71.8%
4091685 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.65 54.0 4.46e-01 98.2% 52.3%
3269487 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.64 46.0 4.21e-01 76.8% 64.0%
3286637 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.64 50.0 3.51e-01 83.9% 29.7%
3619922 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.62 44.0 3.40e-01 73.2% 77.4%
3620861 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.62 55.0 4.17e-01 100.0% 77.0%
3168103 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.62 57.0 4.67e-01 98.2% 87.4%
3204604 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.62 50.0 4.66e-01 94.6% 100.0%
3176029 192.13.1.0 ↗ alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like 0.61 45.0 4.01e-01 78.6% 82.5%
3452591 101.1.1.138 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.61 46.0 3.82e-01 85.7% 75.5%
3980133 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.60 49.0 3.27e-01 94.6% 74.8%
3248710 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.59 44.0 3.49e-01 82.1% 72.5%
3381517 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.58 46.0 3.72e-01 92.9% 81.7%
4223269 101.1.10.50 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF29928 0.58 47.0 3.44e-01 92.9% 51.9%
3742018 7094.1.1.2 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 0.57 50.0 4.19e-01 98.2% 56.8%
3225714 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.56 52.0 3.69e-01 100.0% 54.2%
4843075 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.55 51.0 4.15e-01 100.0% 85.4%
55608 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.55 41.0 3.61e-01 80.4% 58.1%
3413790 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.54 41.0 3.69e-01 82.1% 65.0%
3356095 601.37.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 › PSII_Pbs27 0.54 46.0 3.62e-01 96.4% 72.5%
3683976 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.53 39.0 3.02e-01 80.4% 36.3%