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YP_007379057.1
Arc-VirNC_020158__YP_007379057.1__HVTV1-152__00151
Identity
- Accession:
- NC_020158 ↗
- Protein ID:
- YP_007379057.1 ↗
- Kingdom:
- archaea
Quality
84.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Druskaviridae›
Tredecimvirus›
Haloarcula_vallismortis_tailed_virus_1
TaxID: 1262528
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-78
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 52.0 | 4.66e-01 | 100.0% | 56.9% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 47.0 | 4.62e-01 | 100.0% | 63.9% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 49.0 | 4.77e-01 | 100.0% | 69.5% |
| 2au3A04 | 1.20.50.30 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.66 | 39.0 | 4.37e-01 | 97.3% | 78.2% |
| 2hdoA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 46.0 | 4.96e-01 | 78.7% | 100.0% |
| 2fdrA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 44.0 | 4.62e-01 | 77.3% | 97.0% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 52.0 | 4.24e-01 | 93.3% | 82.6% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 43.0 | 4.34e-01 | 77.3% | 96.1% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 46.0 | 3.85e-01 | 93.3% | 82.9% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 47.0 | 4.44e-01 | 100.0% | 75.3% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.53 | 42.0 | 3.95e-01 | 89.3% | 76.8% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.51 | 34.0 | 3.36e-01 | 94.7% | 63.3% |
| 1tuoA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.51 | 41.0 | 3.59e-01 | 89.3% | 85.5% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.51 | 40.0 | 3.95e-01 | 98.7% | 82.3% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 37.0 | 3.72e-01 | 97.3% | 79.7% |
| 1on2A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.50 | 30.0 | 3.22e-01 | 74.7% | 68.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3219669 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.74 | 43.0 | 5.03e-01 | 92.0% | 86.0% |
| 3604599 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.69 | 42.0 | 3.84e-01 | 100.0% | 45.0% |
| 4934384 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.61 | 47.0 | 4.54e-01 | 98.7% | 74.1% |
| 3479759 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 46.0 | 4.67e-01 | 100.0% | 81.3% |
| 4955389 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.60 | 40.0 | 4.40e-01 | 94.7% | 92.7% |
| 4959578 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.60 | 38.0 | 3.60e-01 | 98.7% | 51.6% |
| 3947982 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.59 | 41.0 | 3.36e-01 | 98.7% | 36.7% |
| 4945549 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.58 | 46.0 | 3.27e-01 | 86.7% | 49.8% |
| 3609820 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 40.0 | 3.32e-01 | 76.0% | 64.0% |
| 3481436 | 102.1.1.77 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › TNK-like_SAM | 0.55 | 35.0 | 3.39e-01 | 100.0% | 55.3% |
| 3484278 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.55 | 47.0 | 3.58e-01 | 98.7% | 73.8% |
| 3509762 | 311.1.1.2 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Band_3_cyto | 0.53 | 39.0 | 3.23e-01 | 78.7% | 80.7% |
| 4946659 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 45.0 | 4.03e-01 | 97.3% | 82.7% |
| 4969326 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.53 | 41.0 | 3.25e-01 | 100.0% | 39.4% |
| 3730474 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.51 | 38.0 | 3.12e-01 | 97.3% | 42.1% |
| 3927015 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 44.0 | 3.74e-01 | 97.3% | 93.6% |