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YP_007379157.1
Arc-VirNC_020159__YP_007379157.1__HSTV2-79__00078
Identity
- Accession:
- NC_020159 ↗
- Protein ID:
- YP_007379157.1 ↗
- Kingdom:
- archaea
Quality
82.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Hafunaviridae›
Mincapvirus›
Halorubrum_sodomense_tailed_virus_2
TaxID: 1262527
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 72-144
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2n54B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 39.0 | 4.07e-01 | 100.0% | 65.2% |
| 3ec1A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 50.0 | 3.83e-01 | 86.3% | 88.8% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.61 | 54.0 | 4.38e-01 | 100.0% | 54.5% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.61 | 42.0 | 4.24e-01 | 93.2% | 70.3% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.61 | 55.0 | 4.87e-01 | 100.0% | 76.9% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.58 | 49.0 | 3.82e-01 | 100.0% | 76.7% |
| 3dxpA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 30.0 | 2.80e-01 | 71.2% | 37.6% |
| 2n93A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 50.0 | 4.19e-01 | 100.0% | 93.8% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 41.0 | 3.48e-01 | 76.7% | 84.2% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.54 | 43.0 | 4.52e-01 | 100.0% | 95.5% |
| 2xi9A02 | 2.30.30.670 | Mainly Beta › Roll › SH3 type barrels. › Thioester domain | 0.53 | 39.0 | 3.57e-01 | 100.0% | 56.9% |
| 1goiA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 44.0 | 4.24e-01 | 100.0% | 100.0% |
| 3alfA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 45.0 | 4.59e-01 | 97.3% | 100.0% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 38.0 | 4.13e-01 | 91.8% | 100.0% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 44.0 | 3.80e-01 | 100.0% | 94.4% |
| 6iw6A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 39.0 | 3.48e-01 | 82.2% | 94.4% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 44.0 | 4.22e-01 | 98.6% | 98.9% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 46.0 | 3.86e-01 | 100.0% | 92.1% |
| 3fc7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 41.0 | 3.75e-01 | 90.4% | 87.0% |
| 2dmwA01 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.51 | 41.0 | 3.55e-01 | 100.0% | 55.2% |
| 4xvcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 40.0 | 2.80e-01 | 91.8% | 70.0% |
| 4hh2B03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 41.0 | 3.74e-01 | 89.0% | 87.0% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.51 | 40.0 | 3.29e-01 | 87.7% | 45.0% |
| 3k6kA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 40.0 | 2.77e-01 | 91.8% | 70.0% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 41.0 | 3.53e-01 | 100.0% | 90.8% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 45.0 | 3.69e-01 | 100.0% | 92.6% |
| 6h5bB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 46.0 | 3.89e-01 | 100.0% | 66.4% |
| 7nn3B01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 39.0 | 2.66e-01 | 90.4% | 75.3% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.50 | 38.0 | 3.28e-01 | 84.9% | 87.2% |
| 4azpA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 45.0 | 3.67e-01 | 100.0% | 88.8% |
| 5llwA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 45.0 | 4.18e-01 | 100.0% | 94.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3808328 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 44.0 | 3.65e-01 | 100.0% | 52.0% |
| 4944138 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 44.0 | 3.92e-01 | 100.0% | 62.9% |
| 3490881 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.52 | 42.0 | 3.53e-01 | 87.7% | 83.9% |
| 4945022 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 47.0 | 4.22e-01 | 100.0% | 74.0% |
| 5046979 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 45.0 | 3.92e-01 | 100.0% | 63.6% |
| 3834262 | 223.2.1.15 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Longin | 0.52 | 44.0 | 3.49e-01 | 100.0% | 47.9% |
| 3390111 | 223.2.1.16 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 | 0.51 | 46.0 | 4.28e-01 | 100.0% | 80.0% |
| 5048741 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 45.0 | 3.93e-01 | 100.0% | 64.5% |
| 5045719 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 45.0 | 3.83e-01 | 100.0% | 62.9% |
| 5071765 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 46.0 | 3.84e-01 | 100.0% | 58.4% |
| 4998686 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 46.0 | 3.62e-01 | 100.0% | 58.0% |
| 5050910 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 47.0 | 3.98e-01 | 100.0% | 67.8% |
| 4964955 | 223.2.1.63 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 | 0.51 | 46.0 | 3.80e-01 | 100.0% | 62.0% |
| 5079770 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 46.0 | 3.89e-01 | 100.0% | 64.2% |
| 5074649 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 46.0 | 3.84e-01 | 100.0% | 59.2% |
| 5031225 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 42.0 | 3.65e-01 | 95.9% | 90.8% |
| 5051614 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 44.0 | 3.72e-01 | 100.0% | 57.6% |
| 4944860 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 45.0 | 3.63e-01 | 100.0% | 55.0% |
| 3515029 | 223.2.1.46 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M | 0.50 | 44.0 | 3.51e-01 | 100.0% | 52.0% |
D2
medium
residues 1-71
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pgbA03 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 43.0 | 3.64e-01 | 71.8% | 51.7% |
| 1l7aA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 40.0 | 2.64e-01 | 70.4% | 43.1% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 32.0 | 3.38e-01 | 98.6% | 63.1% |
| 3hlkA01 | 2.60.40.2240 | Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain | 0.54 | 41.0 | 3.40e-01 | 84.5% | 97.8% |
| 3oftA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 45.0 | 2.91e-01 | 100.0% | 72.0% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 30.0 | 3.22e-01 | 97.2% | 65.0% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 32.0 | 2.79e-01 | 100.0% | 36.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3701390 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.61 | 39.0 | 2.69e-01 | 100.0% | 18.8% |
| 3404320 | 395.1.1.1 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › PTN_MK_C | 0.58 | 35.0 | 4.05e-01 | 98.6% | 97.7% |
| 3301984 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 37.0 | 4.05e-01 | 97.2% | 85.5% |
| 4987319 | 1036.1.1.2 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 | 0.56 | 38.0 | 3.32e-01 | 71.8% | 45.5% |
| 2792216 | 922.1.1.1 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 | 0.55 | 38.0 | 4.10e-01 | 98.6% | 87.9% |
| 3425790 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.55 | 37.0 | 3.45e-01 | 78.9% | 53.7% |
| 3534592 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 35.0 | 3.84e-01 | 94.4% | 83.6% |
| 4993981 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.54 | 34.0 | 3.35e-01 | 70.4% | 56.2% |
| 4169235 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.54 | 35.0 | 2.92e-01 | 100.0% | 37.4% |
| 3458822 | 304.112.1.1 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoL1 | 0.53 | 39.0 | 3.24e-01 | 100.0% | 42.2% |
| 3700323 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 35.0 | 3.81e-01 | 73.2% | 90.9% |
| 4012857 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 35.0 | 3.58e-01 | 70.4% | 81.4% |
| 3651990 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.50 | 32.0 | 3.42e-01 | 97.2% | 79.3% |