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NC_020199.1__YP_007392364.1__H389_gp39__00001

Bact-Vir

NC_020199.1__YP_007392364.1__H389_gp39__00001

Identity

Accession:
NC_020199 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-109
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 39.6 6.80e-10 78.7% 25.6%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.87 80.0 5.28e-01 100.0% 27.1%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.82 56.0 3.74e-01 80.3% 20.4%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 57.0 6.03e-01 77.0% 83.6%
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.78 57.0 4.10e-01 80.3% 28.2%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 50.0 5.76e-01 73.8% 91.1%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.76 55.0 5.55e-01 75.4% 80.0%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 57.0 5.98e-01 82.0% 89.3%
2wv2A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.75 65.0 3.92e-01 100.0% 47.4%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 53.0 5.32e-01 73.8% 77.4%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.75 54.0 4.79e-01 75.4% 64.7%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.74 56.0 5.22e-01 82.0% 70.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 49.0 4.54e-01 70.5% 64.1%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.72 50.0 4.53e-01 72.1% 60.5%
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 53.0 4.42e-01 80.3% 56.9%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 52.0 4.79e-01 77.0% 61.5%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.71 48.0 4.50e-01 70.5% 60.5%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 49.0 3.99e-01 73.8% 41.8%
2cwqA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.69 60.0 4.80e-01 100.0% 52.4%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.69 48.0 4.62e-01 72.1% 73.5%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.68 55.0 4.01e-01 95.1% 91.2%
2x0qA04 1.10.510.40 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › 0.68 55.0 3.84e-01 88.5% 70.7%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.68 55.0 4.74e-01 90.2% 66.0%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.88e-01 83.6% 74.7%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 48.0 4.53e-01 75.4% 65.8%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.65e-01 82.0% 68.8%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 49.0 4.68e-01 78.7% 74.6%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.67 47.0 4.68e-01 75.4% 79.7%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.18e-01 75.4% 59.8%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 5.33e-01 85.2% 93.1%
2zpaA04 1.20.120.890 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA(Met) cytidine acetyltransferase, tail domain 0.66 50.0 3.87e-01 83.6% 92.1%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 49.0 4.56e-01 82.0% 69.7%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 45.0 3.62e-01 75.4% 41.5%
3kflA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.63 51.0 3.67e-01 88.5% 48.0%
2lmgA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 43.0 4.03e-01 75.4% 58.1%
3dkxA02 1.10.10.1480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Plasmid replication protein 0.61 49.0 4.76e-01 88.5% 98.5%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.61 43.0 4.34e-01 73.8% 77.0%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 49.0 4.19e-01 96.7% 98.2%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 43.0 3.94e-01 77.0% 77.1%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.60 43.0 4.30e-01 75.4% 90.3%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.60 42.0 4.05e-01 80.3% 64.4%
4ui9P01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 49.0 3.14e-01 93.4% 32.4%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 43.0 4.10e-01 85.2% 71.6%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 40.0 3.70e-01 73.8% 75.9%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.56 43.0 3.32e-01 83.6% 65.5%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031675 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.93 87.0 7.91e-01 100.0% 78.2%
3602804 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 69.0 7.50e-01 82.0% 100.0%
3943131 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 64.0 6.48e-01 80.3% 76.7%
4680413 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 74.0 7.23e-01 91.8% 84.6%
4071215 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 73.0 7.64e-01 91.8% 100.0%
4281782 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 70.0 6.54e-01 86.9% 70.7%
4400327 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 72.0 6.28e-01 90.2% 61.1%
4558962 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 72.0 7.54e-01 91.8% 100.0%
4441096 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 77.0 7.86e-01 96.7% 96.7%
3586880 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 68.0 7.22e-01 86.9% 94.5%
3254013 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.85 57.0 5.83e-01 70.5% 71.7%
3290277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 65.0 7.14e-01 85.2% 100.0%
4150040 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 59.0 6.74e-01 80.3% 100.0%
4194508 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 70.0 7.31e-01 91.8% 98.2%
3281912 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 60.0 6.32e-01 83.6% 83.6%
4961949 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.83 63.0 6.64e-01 90.2% 89.1%
3957642 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 64.0 6.75e-01 88.5% 92.7%
3945143 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 61.0 6.46e-01 83.6% 87.3%
5042123 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 62.0 5.77e-01 83.6% 65.3%
4954765 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 68.0 7.09e-01 91.8% 100.0%
4943227 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.81 54.0 6.10e-01 73.8% 93.3%
5080584 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 53.0 5.99e-01 72.1% 91.1%
3280314 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 65.0 6.87e-01 86.9% 96.4%
4007744 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 63.0 4.27e-01 86.9% 24.9%
4959044 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 57.0 5.95e-01 85.2% 83.6%
4034069 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 65.0 6.85e-01 91.8% 98.2%
4173465 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 60.0 6.24e-01 85.2% 89.1%
3837930 101.1.1.347 alpha arrays › HTH › HTH › Three-helical HTH › Phage_integrase 0.79 63.0 6.56e-01 90.2% 94.5%
5080070 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 61.0 6.41e-01 86.9% 90.9%
4608916 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 62.0 6.51e-01 86.9% 92.7%
3514120 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 60.0 6.13e-01 85.2% 83.3%
3783338 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 53.0 5.90e-01 70.5% 95.6%
4959580 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 55.0 5.99e-01 80.3% 90.0%
3290335 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 67.0 6.62e-01 93.4% 98.5%
4332912 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.77 55.0 6.00e-01 82.0% 92.0%
3385608 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 62.0 6.27e-01 91.8% 88.3%
3589854 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 62.0 6.09e-01 86.9% 83.1%
3956306 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 62.0 6.54e-01 91.8% 98.2%
4031830 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.76 54.0 5.87e-01 73.8% 90.0%
3968456 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.76 61.0 5.05e-01 88.5% 59.3%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 60.0 4.09e-01 85.2% 26.5%
4537351 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 60.0 6.28e-01 88.5% 94.5%
4499345 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 53.0 5.66e-01 75.4% 100.0%
2417767 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 58.0 5.91e-01 85.2% 86.4%
4493879 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.72 53.0 4.29e-01 77.0% 48.2%
3977114 5069.1.1.2 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB 0.72 53.0 3.58e-01 78.7% 23.6%
3628378 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.72 53.0 3.80e-01 77.0% 65.5%
3998880 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 62.0 5.32e-01 95.1% 61.1%
4224167 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.71 51.0 5.20e-01 78.7% 83.3%
4643518 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.70 48.0 5.01e-01 72.1% 81.8%
4981564 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 57.0 5.94e-01 86.9% 98.2%
3611632 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.69 49.0 4.19e-01 75.4% 52.0%
3780651 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.69 50.0 4.97e-01 77.0% 75.4%
4153644 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.68 50.0 5.12e-01 80.3% 83.3%
3725456 604.3.1.24 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27980 0.68 50.0 4.51e-01 78.7% 58.8%
3783055 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.67 49.0 4.07e-01 78.7% 45.5%
3435408 611.7.1.15 alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Rx_N 0.67 47.0 3.69e-01 73.8% 65.6%
3590293 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.67 54.0 5.59e-01 88.5% 98.2%
5010328 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 50.0 5.16e-01 82.0% 92.7%
3392384 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 46.0 4.34e-01 75.4% 77.3%
3591815 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.64 50.0 4.72e-01 85.2% 89.3%
3260684 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 42.0 4.44e-01 72.1% 78.2%
3288934 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 48.0 4.90e-01 85.2% 96.7%
4618625 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 47.0 4.01e-01 82.0% 52.4%
4998652 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.61 47.0 3.16e-01 91.8% 91.7%
4000005 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 40.0 3.87e-01 75.4% 64.3%