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NC_020200.1__YP_007392443.1__H388_gp36__00036
Bact-VirNC_020200.1__YP_007392443.1__H388_gp36__00036
Identity
- Accession:
- NC_020200 ↗
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Taxonomy
TaxID: 1223262
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-69
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gp6A00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.70 | 60.0 | 3.71e-01 | 92.5% | 51.0% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 49.0 | 4.05e-01 | 76.1% | 44.2% |
| 6lsvA01 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.68 | 58.0 | 3.67e-01 | 92.5% | 52.6% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.68 | 55.0 | 5.02e-01 | 89.6% | 67.4% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 38.0 | 3.94e-01 | 71.6% | 58.1% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 48.0 | 4.15e-01 | 74.6% | 70.6% |
| 1rh5A00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.67 | 53.0 | 3.31e-01 | 88.1% | 48.0% |
| 4wv4B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.67 | 52.0 | 4.74e-01 | 86.6% | 62.4% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.63 | 43.0 | 3.66e-01 | 70.1% | 98.2% |
| 7lv8A01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.63 | 50.0 | 4.73e-01 | 89.6% | 73.8% |
| 3lxuX06 | 1.25.40.710 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 46.0 | 3.07e-01 | 76.1% | 33.7% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 46.0 | 3.58e-01 | 83.6% | 88.7% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 45.0 | 4.06e-01 | 82.1% | 60.0% |
| 6ks6E03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.58 | 44.0 | 3.42e-01 | 85.1% | 46.9% |
| 1o5wA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 37.0 | 2.67e-01 | 71.6% | 78.7% |
| 3wctD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 39.0 | 3.09e-01 | 77.6% | 65.3% |
| 1yqyA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.53 | 40.0 | 2.87e-01 | 82.1% | 92.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3736214 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.74 | 58.0 | 4.77e-01 | 85.1% | 50.0% |
| 3598562 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.72 | 56.0 | 5.07e-01 | 85.1% | 66.7% |
| 3489407 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.71 | 56.0 | 5.33e-01 | 86.6% | 75.0% |
| 3795987 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.70 | 49.0 | 3.17e-01 | 73.1% | 17.3% |
| 3697466 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.69 | 46.0 | 3.20e-01 | 70.1% | 30.9% |
| 3218644 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 47.0 | 3.85e-01 | 71.6% | 46.7% |
| 3510618 | 148.1.1.6 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID-31kDa | 0.68 | 53.0 | 4.44e-01 | 85.1% | 50.4% |
| 3244185 | 381.1.1.1 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR | 0.67 | 46.0 | 3.61e-01 | 70.1% | 91.4% |
| 5023752 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.67 | 51.0 | 5.01e-01 | 83.6% | 76.0% |
| 3531746 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.65 | 44.0 | 3.81e-01 | 70.1% | 67.6% |
| 3712221 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.65 | 51.0 | 3.94e-01 | 83.6% | 42.8% |
| 3444835 | 5050.1.1.70 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › EMP70 | 0.64 | 48.0 | 3.12e-01 | 80.6% | 63.6% |
| 2732320 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.64 | 50.0 | 4.46e-01 | 88.1% | 62.7% |
| 4669956 | 5060.1.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C | 0.64 | 46.0 | 2.97e-01 | 76.1% | 27.8% |
| 5070237 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.63 | 43.0 | 3.94e-01 | 70.1% | 58.9% |
| 3213193 | 148.1.1.15 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-X | 0.63 | 50.0 | 4.84e-01 | 88.1% | 82.7% |
| 3619662 | 192.12.1.3 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › DUF747 | 0.63 | 49.0 | 4.59e-01 | 82.1% | 73.8% |
| 3240217 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.61 | 43.0 | 3.87e-01 | 74.6% | 69.5% |
| 5032549 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.61 | 48.0 | 3.90e-01 | 86.6% | 86.9% |
| 3406162 | 4006.1.1.13 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › DUF842 | 0.60 | 44.0 | 3.62e-01 | 79.1% | 69.6% |
| 4941496 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.58 | 47.0 | 3.33e-01 | 89.6% | 73.2% |
| 3717076 | 223.2.1.28 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Afi1 | 0.53 | 43.0 | 3.23e-01 | 92.5% | 84.3% |
D2
high
residues 83-153
Domain cluster:
rep: NC_019455.1__YP_007002939.1__F357_gp31__00031__D245-312
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10123.15 best | Mu-like_Pro | 63.7 | 3.10e-17 | 100.0% | 21.0% |