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NC_020201.1__YP_007392476.1__phiTE_014__00014

Bact-Vir

NC_020201.1__YP_007392476.1__phiTE_014__00014

Identity

Accession:
NC_020201 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Pectobacterium_phage_phiTE

TaxID: 1116482

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-59
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 64.0 5.33e-01 95.7% 79.5%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 60.0 5.38e-01 100.0% 68.2%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.68 47.0 3.57e-01 73.9% 39.8%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.67 52.0 3.94e-01 91.3% 42.4%
3kk7A03 3.30.160.840 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 50.0 4.52e-01 80.4% 62.9%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.63 50.0 3.71e-01 100.0% 70.2%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 49.0 4.51e-01 89.1% 74.2%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 3.36e-01 80.4% 57.1%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 50.0 4.81e-01 100.0% 89.5%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 3.56e-01 80.4% 38.2%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.60 40.0 3.29e-01 71.7% 52.6%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.60 48.0 3.84e-01 97.8% 74.5%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.59 50.0 3.66e-01 100.0% 79.6%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.51e-01 91.3% 42.6%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 41.0 3.63e-01 80.4% 89.0%
6eziA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 43.0 3.70e-01 93.5% 69.8%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 39.0 4.13e-01 84.8% 91.9%
1xm8A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 46.0 2.91e-01 95.7% 61.8%
2edzA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 41.0 3.28e-01 89.1% 53.2%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 37.0 2.34e-01 76.1% 20.6%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 36.0 2.47e-01 71.7% 30.1%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.38e-01 93.5% 41.7%
3o46A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 41.0 3.56e-01 93.5% 72.6%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 35.0 2.71e-01 73.9% 27.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959885 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.73 60.0 4.95e-01 93.5% 56.5%
4026211 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.72 54.0 5.27e-01 82.6% 94.0%
4992374 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.71 59.0 5.31e-01 95.7% 70.8%
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 52.0 5.18e-01 87.0% 82.0%
5079725 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 57.0 5.33e-01 100.0% 86.7%
3673863 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.68 57.0 4.85e-01 97.8% 66.3%
3932430 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.67 52.0 4.65e-01 89.1% 64.3%
4965851 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.67 54.0 5.19e-01 97.8% 87.3%
4989457 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 50.0 4.93e-01 89.1% 80.0%
3618504 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.65 47.0 4.34e-01 91.3% 60.0%
3524527 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.65 47.0 3.68e-01 80.4% 38.2%
4543309 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 44.0 3.40e-01 73.9% 34.8%
3243842 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 44.0 3.39e-01 76.1% 30.9%
3216768 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 50.0 4.10e-01 100.0% 50.5%
3798357 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 52.0 4.56e-01 97.8% 61.3%
3646226 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.63 47.0 4.05e-01 84.8% 82.5%
3715871 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 55.0 4.03e-01 100.0% 43.2%
3987799 4221.1.1.1 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.63 47.0 4.23e-01 84.8% 58.6%
3969368 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 3.62e-01 87.0% 43.6%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 44.0 4.25e-01 82.6% 70.9%
3260374 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.60 43.0 3.53e-01 80.4% 41.9%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 47.0 3.74e-01 100.0% 62.7%
3740597 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.59 46.0 2.68e-01 91.3% 23.5%
3331569 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.59 41.0 3.97e-01 73.9% 61.8%
5878 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.58 46.0 3.55e-01 100.0% 53.8%
3403344 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.57 43.0 4.08e-01 91.3% 71.7%
3546005 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.57 43.0 3.35e-01 89.1% 50.0%
5045429 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 3.44e-01 87.0% 46.3%
5032233 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.22e-01 91.3% 79.1%
3903350 386.1.1.280 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27047 0.54 38.0 3.63e-01 87.0% 76.9%
3926425 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.53 36.0 2.94e-01 73.9% 41.0%
4398001 375.1.1.189 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › EcdD_BsdD_detox 0.51 38.0 3.47e-01 93.5% 57.3%
3259661 331.23.1.9 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › RnlA_toxin 0.50 37.0 3.30e-01 82.6% 70.0%
4246369 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 40.0 2.41e-01 100.0% 56.0%
D2 high residues 72-111
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.68 58.0 4.50e-01 100.0% 79.3%
1zoyA04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.64 43.0 3.80e-01 72.5% 61.5%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 47.0 3.36e-01 100.0% 27.7%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.60 40.0 3.21e-01 100.0% 29.7%
3fdfA02 6.10.140.550 Special › Helix non-globular › Helix Hairpins › 0.59 40.0 3.63e-01 100.0% 51.8%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.54 40.0 2.60e-01 82.5% 78.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 39.0 3.36e-01 100.0% 46.1%
1auiA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 36.0 2.17e-01 77.5% 82.5%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 2.69e-01 100.0% 88.2%
1knzA02 3.30.70.1610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.67e-01 90.0% 80.8%
3qowA01 1.10.260.60 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.52 45.0 3.23e-01 100.0% 59.0%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 40.0 3.17e-01 90.0% 58.1%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 2.96e-01 95.0% 86.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3819239 221.1.1.13 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA 0.67 51.0 3.83e-01 100.0% 34.7%
3901340 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 40.0 3.62e-01 100.0% 40.0%
3583046 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 45.0 4.16e-01 100.0% 60.0%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 42.0 4.01e-01 100.0% 67.3%
3710894 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 42.0 3.82e-01 100.0% 56.9%
4929843 4123.1.1.0 ↗ few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like 0.57 39.0 3.86e-01 100.0% 66.0%
3443985 221.1.1.33 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DWNN 0.57 36.0 3.19e-01 95.0% 36.7%
3269296 2006.1.6.22 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF5920 0.55 46.0 2.93e-01 100.0% 19.0%
4930302 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 39.0 4.02e-01 100.0% 91.4%
4152050 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.54 40.0 2.70e-01 100.0% 20.6%
4495385 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.53 44.0 2.56e-01 95.0% 10.9%
4987112 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 2.75e-01 82.5% 27.7%
3429487 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.52 35.0 2.02e-01 70.0% 7.9%
3268123 192.15.1.184 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › RA 0.51 39.0 3.12e-01 100.0% 37.1%