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NC_020201.1__YP_007392583.1__phiTE_121__00121

Bact-Vir

NC_020201.1__YP_007392583.1__phiTE_121__00121

Identity

Accession:
NC_020201 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Pectobacterium_phage_phiTE

TaxID: 1116482

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.76 52.0 4.55e-01 70.1% 91.5%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.76 52.0 3.74e-01 82.1% 25.9%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.73 50.0 3.22e-01 70.1% 84.6%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.72 46.0 4.31e-01 80.6% 53.7%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.72 50.0 4.45e-01 73.1% 64.2%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.68 46.0 3.12e-01 70.1% 56.7%
3oqbH02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.67 51.0 3.45e-01 80.6% 68.6%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 49.0 3.93e-01 77.6% 40.9%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.66 48.0 4.07e-01 77.6% 56.2%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 47.0 2.93e-01 74.6% 24.3%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.65 50.0 3.40e-01 97.0% 22.4%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 49.0 3.98e-01 82.1% 50.4%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.64 54.0 3.44e-01 92.5% 19.8%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 44.0 2.85e-01 71.6% 40.8%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.64 43.0 3.85e-01 82.1% 49.5%
2xvlA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.63 48.0 3.34e-01 92.5% 23.9%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.63 47.0 3.25e-01 80.6% 40.3%
3qcwA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 44.0 3.19e-01 73.1% 45.6%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 46.0 3.37e-01 77.6% 59.6%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 47.0 4.15e-01 80.6% 60.6%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 3.54e-01 89.6% 59.5%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.61 34.0 3.45e-01 76.1% 54.5%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 43.0 3.14e-01 74.6% 68.4%
3vm7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 43.0 3.80e-01 74.6% 94.9%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.61 44.0 3.38e-01 74.6% 80.4%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 3.17e-01 70.1% 42.6%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.60 47.0 3.31e-01 92.5% 26.1%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 42.0 2.72e-01 76.1% 31.4%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 46.0 3.43e-01 88.1% 71.0%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.58 41.0 2.93e-01 74.6% 35.4%
3krnA00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 39.0 3.00e-01 77.6% 90.2%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 39.0 3.89e-01 76.1% 69.6%
1tl2A00 2.115.10.10 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Tachylectin 2 0.55 38.0 2.64e-01 73.1% 34.9%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.54 38.0 3.26e-01 74.6% 72.3%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.54 45.0 3.36e-01 97.0% 75.4%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 47.0 3.72e-01 98.5% 52.5%
2i06A01 3.50.14.10 Alpha Beta › 3-Layer(bba) Sandwich › Replication Terminator Protein (Tus); Chain A, domain 1 › Replication terminator Tus, domain 1 superfamily/Replication terminator Tus 0.54 47.0 3.29e-01 97.0% 97.2%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.90e-01 94.0% 58.4%
1evjC02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 40.0 2.94e-01 82.1% 74.6%
2o34A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.53 42.0 2.95e-01 92.5% 35.3%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.52 45.0 2.80e-01 100.0% 35.7%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.63e-01 85.1% 95.3%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.75e-01 97.0% 52.8%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 2.82e-01 77.6% 43.1%
3hl6A01 3.30.1300.50 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain 0.50 38.0 3.71e-01 82.1% 82.4%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.50 36.0 3.28e-01 76.1% 87.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248668 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.81 57.0 5.36e-01 86.6% 61.3%
3508839 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.78 57.0 3.78e-01 76.1% 59.6%
4234211 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.77 49.0 4.50e-01 82.1% 50.6%
3576508 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.76 48.0 4.79e-01 70.1% 61.4%
1005531 12.2.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Baculo_E66 0.76 52.0 4.52e-01 70.1% 89.6%
3180028 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.75 54.0 3.35e-01 76.1% 40.9%
4149683 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.74 55.0 3.40e-01 77.6% 41.1%
3210934 77.3.1.7 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF31062 0.73 52.0 4.48e-01 83.6% 47.6%
3179454 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.73 53.0 4.25e-01 76.1% 99.2%
4031368 3264.1.1.0 ↗ 0.71 51.0 3.89e-01 76.1% 37.2%
3621723 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.70 53.0 3.51e-01 79.1% 33.6%
4021772 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.69 50.0 3.79e-01 76.1% 92.9%
3396774 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.69 52.0 4.40e-01 80.6% 74.5%
4462309 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.68 52.0 3.56e-01 80.6% 76.7%
3506428 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.68 51.0 4.03e-01 80.6% 55.6%
4003463 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.68 50.0 4.08e-01 79.1% 66.4%
5015520 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.68 53.0 3.67e-01 83.6% 26.7%
None — 0.67 50.0 3.26e-01 77.6% 78.5%
3596151 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.67 48.0 4.08e-01 74.6% 69.5%
4489670 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.67 51.0 3.98e-01 80.6% 100.0%
4942828 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.67 50.0 3.78e-01 80.6% 78.0%
3225640 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.67 46.0 3.76e-01 73.1% 61.6%
3290463 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 49.0 3.84e-01 77.6% 77.8%
3981998 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 46.0 4.03e-01 73.1% 70.0%
3219544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 58.0 3.74e-01 98.5% 27.4%
3215166 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.65 52.0 4.64e-01 86.6% 62.1%
4034422 3425.2.1.3 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 0.65 46.0 3.16e-01 76.1% 49.0%
3942485 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.64 45.0 3.67e-01 79.1% 40.8%
3697914 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.64 49.0 3.07e-01 80.6% 79.1%
4995145 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.63 48.0 4.44e-01 80.6% 76.5%
3934175 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.63 47.0 3.89e-01 80.6% 65.8%
3600254 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 48.0 3.44e-01 82.1% 75.7%
3383213 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.62 46.0 2.96e-01 79.1% 93.1%
3593313 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 48.0 3.49e-01 85.1% 72.1%
4459575 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.61 43.0 3.38e-01 74.6% 57.1%
3619455 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 43.0 3.88e-01 74.6% 86.3%
5045509 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.61 33.0 3.91e-01 73.1% 77.8%
3581438 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.60 51.0 3.27e-01 100.0% 65.2%
4247937 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 49.0 4.13e-01 88.1% 69.1%
3345737 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.59 45.0 2.92e-01 82.1% 35.2%
3709449 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 3.15e-01 92.5% 67.5%
4679871 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.58 42.0 3.99e-01 76.1% 65.0%
4307220 7515.1.1.5 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.58 50.0 3.07e-01 98.5% 35.2%
3266298 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 45.0 3.69e-01 88.1% 76.9%
5042309 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.57 41.0 3.75e-01 76.1% 56.7%
3684135 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 46.0 2.97e-01 91.0% 93.3%
3273806 59.1.1.6 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIIC_sub6 0.57 39.0 4.02e-01 73.1% 81.5%
3722019 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.56 38.0 2.98e-01 89.6% 31.7%
3704886 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.56 42.0 2.57e-01 83.6% 28.8%
3343255 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.56 46.0 2.87e-01 100.0% 57.1%
3613739 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.50e-01 91.0% 75.2%
4678303 5.1.4.325 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30552 0.54 44.0 2.87e-01 98.5% 61.1%
5015074 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.53 39.0 3.81e-01 79.1% 72.0%
3495361 5.1.4.402 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30552 0.51 42.0 2.73e-01 100.0% 54.0%