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NC_020205.1__YP_007392909.1__H390_gp20__00020

Bact-Vir

NC_020205.1__YP_007392909.1__H390_gp20__00020

Identity

Accession:
NC_020205 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 2.93e-01 100.0% 42.4%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.50 30.0 3.01e-01 83.0% 54.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266668 101.1.2.69 alpha arrays › HTH › HTH › winged helix domain › La 0.56 35.0 2.93e-01 96.2% 34.0%
3737204 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 33.0 3.01e-01 92.5% 46.7%
3480298 101.1.2.69 alpha arrays › HTH › HTH › winged helix domain › La 0.50 34.0 3.02e-01 98.1% 44.7%
D2 medium residues 65-222
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16190.12 best E1_FCCH 42.6 7.20e-11 42.4% 82.9%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 34.0 4.74e-01 100.0% 93.3%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 38.0 3.03e-01 100.0% 27.5%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 34.0 2.79e-01 100.0% 27.5%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 36.0 2.78e-01 100.0% 25.7%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 37.0 2.83e-01 100.0% 26.3%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 37.0 2.90e-01 100.0% 29.6%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.61 24.0 2.90e-01 94.3% 53.3%
6hyfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.79e-01 96.8% 91.5%
3s98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 28.0 3.42e-01 77.8% 84.2%
5jipA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 27.0 3.42e-01 76.6% 87.8%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.39e-01 76.6% 82.4%
2ekjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 28.0 3.27e-01 77.2% 76.2%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 28.0 3.45e-01 75.9% 90.0%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 27.0 3.39e-01 74.7% 88.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022923 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.73 37.0 4.89e-01 99.4% 89.4%
4945459 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.72 37.0 2.88e-01 100.0% 24.8%
4943983 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.72 37.0 2.66e-01 100.0% 18.1%
3928902 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.70 35.0 2.75e-01 100.0% 23.9%
3418340 5.1.5.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.70 38.0 2.94e-01 100.0% 24.8%
None 0.70 35.0 2.69e-01 100.0% 21.7%
None 0.70 34.0 2.67e-01 100.0% 22.1%
3217145 5.1.4.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.69 35.0 2.64e-01 100.0% 21.4%
4876314 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 35.0 2.80e-01 100.0% 25.0%
4946758 5.1.5.234 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › LVIVD 0.68 36.0 2.89e-01 100.0% 27.2%
3928876 5.1.4.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.67 36.0 2.77e-01 100.0% 24.3%
5050247 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.66 35.0 2.76e-01 100.0% 25.2%
3277314 5.1.4.482 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_WDR75_2nd 0.65 34.0 2.51e-01 100.0% 19.5%
3937921 5.1.3.170 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd 0.65 34.0 2.64e-01 100.0% 23.3%
3330702 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 38.0 2.95e-01 100.0% 27.7%
None 0.65 35.0 2.80e-01 100.0% 26.5%
3714170 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.64 36.0 2.49e-01 100.0% 17.1%
3228101 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 35.0 2.76e-01 100.0% 26.9%
3561744 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 35.0 2.69e-01 100.0% 23.7%
3409045 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 35.0 2.53e-01 100.0% 20.2%
4029623 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 34.0 2.35e-01 99.4% 15.4%
3704809 5.1.4.422 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 0.60 35.0 2.69e-01 100.0% 25.9%
3665094 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 36.0 2.74e-01 100.0% 26.0%
3743052 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.59 37.0 2.62e-01 100.0% 21.6%
3785172 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 37.0 2.90e-01 100.0% 29.4%
3623507 5.1.4.363 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, CAF1C_H4-bd 0.58 37.0 2.67e-01 100.0% 23.3%
4501486 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 36.0 2.83e-01 100.0% 30.8%
3738102 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 38.0 2.91e-01 100.0% 33.4%
3652988 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 36.0 2.72e-01 100.0% 30.0%
3371576 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 38.0 2.70e-01 100.0% 25.6%
3393981 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.96e-01 100.0% 32.6%
5080711 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 27.0 3.57e-01 77.2% 100.0%
3261845 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 32.0 2.43e-01 100.0% 26.0%
3682185 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 34.0 2.43e-01 100.0% 24.3%
D3 medium residues 241-275_360-386
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.73 66.0 5.81e-01 100.0% 92.2%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 63.0 5.86e-01 100.0% 86.1%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 62.0 5.87e-01 100.0% 85.3%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.69 57.0 4.84e-01 95.2% 63.3%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.67 57.0 5.12e-01 100.0% 79.3%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 56.0 4.73e-01 93.5% 70.9%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 55.0 4.90e-01 93.5% 77.2%
2dy3D01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.66 57.0 4.64e-01 100.0% 56.9%
4lusB01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.65 57.0 4.35e-01 100.0% 54.4%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 56.0 4.04e-01 100.0% 69.4%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 50.0 3.27e-01 91.9% 22.1%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 47.0 3.65e-01 82.3% 68.5%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.63 40.0 4.45e-01 74.2% 87.0%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 52.0 4.62e-01 100.0% 86.5%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.62 37.0 4.24e-01 74.2% 84.1%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 49.0 4.42e-01 87.1% 95.2%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 53.0 4.83e-01 100.0% 85.9%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 44.0 4.84e-01 80.6% 100.0%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 50.0 4.59e-01 100.0% 73.6%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 50.0 4.41e-01 100.0% 69.1%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 43.0 3.39e-01 80.6% 87.3%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 46.0 4.01e-01 91.9% 98.0%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 42.0 3.21e-01 80.6% 76.0%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.57 35.0 4.01e-01 74.2% 90.5%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.57 47.0 4.28e-01 100.0% 79.8%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 45.0 3.98e-01 93.5% 98.0%
1v5vA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 44.0 3.42e-01 95.2% 54.9%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 43.0 3.66e-01 88.7% 66.1%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 45.0 4.02e-01 100.0% 67.3%
2cnzA00 2.60.40.1570 Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin 0.55 46.0 3.80e-01 100.0% 84.6%
2xrcC04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 45.0 3.39e-01 100.0% 40.4%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.54 39.0 3.06e-01 82.3% 60.9%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 39.0 3.30e-01 82.3% 72.5%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 40.0 2.98e-01 80.6% 50.9%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.60e-01 95.2% 90.6%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.79e-01 100.0% 92.0%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.52 43.0 3.23e-01 100.0% 42.3%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.25e-01 91.9% 83.7%
1fm2B01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 37.0 2.50e-01 77.4% 84.0%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 39.0 3.44e-01 83.9% 66.7%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 3.44e-01 95.2% 85.8%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 40.0 3.57e-01 90.3% 88.4%
2k5gA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.09e-01 93.5% 71.1%
2uzzA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.51 36.0 2.67e-01 77.4% 33.0%
6khjH01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.51 39.0 2.53e-01 90.3% 93.2%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 37.0 2.18e-01 82.3% 18.4%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.31e-01 96.8% 44.9%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 37.0 3.12e-01 82.3% 73.1%
3mfdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 40.0 2.77e-01 91.9% 50.4%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.50 41.0 3.34e-01 100.0% 51.4%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 43.0 3.30e-01 95.2% 85.8%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 40.0 3.15e-01 98.4% 84.8%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 34.0 3.17e-01 93.5% 54.2%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4235076 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.77 64.0 5.90e-01 100.0% 71.2%
3597282 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.76 67.0 6.15e-01 100.0% 75.0%
3821402 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 68.0 5.54e-01 100.0% 85.5%
4660673 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 66.0 5.95e-01 100.0% 76.5%
3596767 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.74 66.0 5.63e-01 100.0% 83.0%
2161972 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 65.0 5.95e-01 100.0% 79.5%
1515984 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.73 66.0 5.60e-01 100.0% 83.0%
3596642 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 65.0 5.83e-01 100.0% 76.5%
5005052 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 55.0 5.80e-01 80.6% 100.0%
4072878 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 63.0 5.80e-01 100.0% 76.2%
None 0.72 63.0 3.88e-01 98.4% 17.6%
4883586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 63.0 5.69e-01 100.0% 75.6%
3944437 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 65.0 5.92e-01 100.0% 77.5%
3642150 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 63.0 5.49e-01 100.0% 65.3%
4854964 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 63.0 5.65e-01 100.0% 75.6%
4255707 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.70 62.0 4.79e-01 100.0% 57.9%
4518787 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 62.0 5.89e-01 100.0% 85.3%
2556060 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 61.0 5.71e-01 100.0% 82.1%
5000763 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 62.0 5.48e-01 100.0% 81.1%
4080130 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 58.0 5.50e-01 100.0% 78.7%
4402716 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 58.0 5.29e-01 100.0% 69.4%
3946118 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 56.0 5.26e-01 88.7% 97.3%
4016558 1.1.7.46 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.68 59.0 4.57e-01 100.0% 82.1%
5022659 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 56.0 5.26e-01 90.3% 77.3%
4656452 1.1.13.63 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Queuosine_synth 0.68 60.0 4.74e-01 100.0% 56.9%
5041917 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.68 58.0 5.22e-01 100.0% 81.1%
5000971 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 59.0 5.24e-01 100.0% 86.7%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.67 58.0 5.02e-01 100.0% 72.0%
4946423 1.1.7.138 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.66 57.0 4.95e-01 100.0% 77.0%
4060574 1.1.7.70 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.65 54.0 5.14e-01 98.4% 96.0%
4066771 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 55.0 4.90e-01 100.0% 77.9%
3665168 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.64 52.0 4.30e-01 93.5% 81.7%
4332590 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 48.0 4.47e-01 93.5% 65.9%
1030933 1.1.7.29 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › End_beta_barrel 0.62 54.0 4.83e-01 100.0% 82.0%
3171919 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 43.0 3.91e-01 75.8% 100.0%
4927036 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 49.0 4.55e-01 95.2% 74.1%
3286935 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 44.0 3.90e-01 82.3% 91.6%
3387865 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 44.0 3.82e-01 80.6% 69.5%
3730935 2003.1.2.102 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.58 41.0 2.48e-01 75.8% 15.6%
5059013 11.1.1.171 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.58 50.0 4.28e-01 96.8% 94.0%
5017794 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 45.0 4.05e-01 87.1% 94.4%
3651713 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.58 43.0 3.21e-01 82.3% 58.3%
4337723 4000.1.1.1 a+b two layers › Escherichia coli HybE › Escherichia coli HybE › Escherichia coli HybE › NiFe-hyd_HybE 0.58 49.0 3.88e-01 98.4% 64.3%
4452289 4000.1.1.1 a+b two layers › Escherichia coli HybE › Escherichia coli HybE › Escherichia coli HybE › NiFe-hyd_HybE 0.57 48.0 3.82e-01 98.4% 60.7%
3771405 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 3.65e-01 98.4% 54.5%
4059476 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.05e-01 100.0% 86.7%
4459347 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.57 45.0 3.10e-01 91.9% 61.6%
3409241 223.2.1.31 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.57 43.0 3.23e-01 85.5% 71.4%
5006332 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 41.0 3.78e-01 82.3% 95.3%
5002657 12.1.1.114 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.55 45.0 4.22e-01 100.0% 81.2%
4098695 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.55 41.0 2.85e-01 83.9% 31.8%
3615124 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.55 37.0 2.34e-01 71.0% 25.3%
4949049 3488.1.1.5 a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Cache_3-Cache_2 0.55 43.0 3.65e-01 90.3% 67.8%
3971124 223.1.1.58 a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.55 43.0 3.59e-01 87.1% 61.7%
3970193 319.3.1.0 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.54 42.0 3.73e-01 87.1% 96.8%
4258974 223.2.1.23 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.54 42.0 3.16e-01 87.1% 47.3%
5051305 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 42.0 3.44e-01 88.7% 61.6%
4970326 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 44.0 3.99e-01 100.0% 78.9%
3930154 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 42.0 3.18e-01 88.7% 50.9%
3701279 304.107.1.10 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.54 43.0 3.82e-01 91.9% 67.4%
3482071 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.54 45.0 3.58e-01 96.8% 93.3%
4348176 11.1.1.171 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.53 43.0 3.72e-01 98.4% 93.9%
3742847 223.2.1.23 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.53 42.0 3.02e-01 88.7% 45.3%
3743975 331.4.1.4 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › Fungal_KA1 0.53 42.0 3.54e-01 90.3% 77.4%
4943640 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.31e-01 87.1% 63.2%
3576362 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.87e-01 100.0% 97.0%
5000153 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.52 41.0 3.83e-01 91.9% 81.9%
3738757 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 41.0 2.42e-01 90.3% 16.2%
3974381 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 3.23e-01 87.1% 53.8%
4976928 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.38e-01 90.3% 65.2%
4453642 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 2.93e-01 87.1% 42.3%
5044876 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.51 40.0 3.81e-01 91.9% 91.3%
4984757 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 40.0 3.58e-01 87.1% 82.2%
5050119 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.50 39.0 3.61e-01 91.9% 81.1%
D4 medium residues 285-358
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.76 45.0 4.09e-01 100.0% 46.3%
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.74 36.0 2.20e-01 95.9% 8.6%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 4.54e-01 100.0% 68.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 42.0 4.36e-01 100.0% 65.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 39.0 4.09e-01 100.0% 61.5%
2g5fB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 45.0 2.85e-01 100.0% 26.0%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.52 45.0 2.78e-01 100.0% 68.8%
6z30A02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.52 39.0 3.31e-01 85.1% 100.0%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.51 44.0 2.80e-01 100.0% 26.9%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 38.0 2.48e-01 82.4% 20.1%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 37.0 3.04e-01 83.8% 87.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4201878 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 42.0 4.51e-01 100.0% 66.2%
4950806 4.6.1.8 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › WH_Lhr 0.72 35.0 4.05e-01 98.6% 61.8%
3240933 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.71 39.0 2.46e-01 100.0% 11.0%
3213571 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.71 39.0 2.47e-01 100.0% 11.3%
3797513 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.70 38.0 2.50e-01 100.0% 12.5%
3710027 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 38.0 3.18e-01 100.0% 31.5%
3790784 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 38.0 2.57e-01 100.0% 14.7%
3785593 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.57 43.0 4.09e-01 82.4% 96.7%
3502375 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.55 31.0 3.94e-01 95.9% 93.3%
3818230 376.1.2.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.53 34.0 3.64e-01 100.0% 72.3%
5075825 247.1.1.12 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.53 37.0 2.75e-01 75.7% 41.0%
D5 medium residues 393-436
PDB