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NC_020835.1__YP_007672656.1__PROG_00003__00003

Bact-Vir

NC_020835.1__YP_007672656.1__PROG_00003__00003

Identity

Accession:
NC_020835 ↗
Kingdom:
phage

Quality

54.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Tangaroavirus› Prochlorococcus_phage_P-SSP10

TaxID: 885867

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 143-252
PDB
D2 high residues 256-406
PDB
D3 high residues 699-825
PDB
D4 high residues 834-956
PDB
D5 medium residues 21-87
PDB
D6 medium residues 425-498
PDB
D7 medium residues 573-664
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.75 54.0 4.69e-01 93.5% 51.1%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 49.0 4.84e-01 92.4% 68.8%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.68 55.0 3.90e-01 95.7% 29.2%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.67 48.0 5.14e-01 84.8% 88.5%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.67 46.0 3.48e-01 94.6% 29.4%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 49.0 4.45e-01 78.3% 75.6%
3jvoA00 1.10.3230.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein 0.65 48.0 4.74e-01 83.7% 74.0%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.65 49.0 4.87e-01 80.4% 87.5%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.65 46.0 4.52e-01 76.1% 69.4%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.64 53.0 5.38e-01 95.7% 92.3%
7vwtA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.64 46.0 3.16e-01 75.0% 25.1%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.63 45.0 4.43e-01 95.7% 68.9%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.63 35.0 3.89e-01 84.8% 69.0%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 43.0 4.35e-01 71.7% 93.6%
7q37A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.61 50.0 3.81e-01 96.7% 37.9%
2i53A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 43.0 4.13e-01 97.8% 62.2%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.61 42.0 4.33e-01 70.7% 82.6%
3piwA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 42.0 3.51e-01 71.7% 90.9%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 39.0 4.57e-01 75.0% 100.0%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.60 42.0 2.88e-01 75.0% 95.5%
2c5zA00 1.10.1740.100 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain 0.60 48.0 4.79e-01 94.6% 87.1%
3f75P00 1.10.287.2250 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 39.0 4.25e-01 82.6% 82.7%
1cp9B03 1.10.1400.10 Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region 0.59 53.0 4.42e-01 100.0% 91.9%
8anqA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 51.0 3.89e-01 97.8% 40.6%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.57 36.0 3.81e-01 94.6% 71.6%
5bulA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 3.09e-01 90.2% 80.1%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 44.0 4.20e-01 83.7% 87.7%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 43.0 4.05e-01 92.4% 66.7%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 44.0 4.01e-01 96.7% 63.8%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 47.0 3.29e-01 100.0% 96.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.54 44.0 4.34e-01 87.0% 97.9%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 44.0 3.20e-01 92.4% 71.4%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 45.0 4.04e-01 95.7% 64.2%
4k5yA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 47.0 3.50e-01 100.0% 48.8%
3h87B00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.52 37.0 3.23e-01 73.9% 53.6%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 35.0 3.26e-01 88.0% 56.8%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.52 43.0 3.67e-01 92.4% 66.0%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.51 38.0 3.56e-01 91.3% 62.8%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.51 37.0 3.47e-01 89.1% 61.5%
3x0uB01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.50 43.0 3.20e-01 100.0% 36.2%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 45.0 3.76e-01 98.9% 70.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 42.0 3.93e-01 93.5% 73.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048048 4957.1.1.9 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS 0.77 57.0 6.24e-01 92.4% 96.0%
3595441 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.73 56.0 4.87e-01 85.9% 53.6%
3879854 603.1.1.89 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TRAP-gamma 0.73 63.0 5.62e-01 92.4% 91.2%
3942487 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.71 45.0 4.14e-01 70.7% 49.2%
3580090 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.69 57.0 5.06e-01 89.1% 78.5%
4458854 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.69 48.0 4.33e-01 72.8% 82.4%
2573905 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.68 48.0 4.88e-01 73.9% 100.0%
3787527 142.3.1.1 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C 0.67 56.0 5.80e-01 93.5% 97.6%
3249883 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.67 58.0 5.17e-01 92.4% 96.8%
3335328 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.66 50.0 4.90e-01 84.8% 74.0%
3460365 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.66 49.0 4.55e-01 77.2% 80.0%
3700820 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.66 50.0 5.08e-01 80.4% 84.4%
3989179 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.66 59.0 4.40e-01 97.8% 84.0%
3577210 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.66 55.0 4.95e-01 92.4% 70.8%
4095141 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.66 48.0 4.33e-01 75.0% 72.5%
3947908 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.65 45.0 4.62e-01 79.3% 74.4%
4946095 633.2.1.0 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.65 56.0 5.30e-01 97.8% 84.5%
3349480 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.65 52.0 5.32e-01 93.5% 88.9%
3412881 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.65 49.0 5.24e-01 95.7% 95.0%
3707815 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 49.0 4.43e-01 82.6% 59.2%
5002537 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.64 55.0 4.16e-01 96.7% 82.2%
3280735 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.64 45.0 4.00e-01 71.7% 51.5%
3891331 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.64 50.0 4.40e-01 96.7% 58.5%
3588872 601.1.1.11 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › EcsB 0.63 46.0 3.91e-01 77.2% 50.3%
3739098 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.63 49.0 4.34e-01 82.6% 73.1%
3206112 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.63 49.0 4.61e-01 82.6% 84.5%
5058985 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.62 45.0 3.82e-01 78.3% 45.0%
3272092 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.61 48.0 4.84e-01 83.7% 98.9%
3304227 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.61 45.0 4.83e-01 78.3% 97.5%
3459884 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.61 46.0 3.43e-01 80.4% 36.1%
3356616 632.22.1.67 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842 0.60 52.0 5.10e-01 94.6% 87.0%
3411768 627.1.1.2 ↗ alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 0.59 44.0 4.42e-01 98.9% 76.8%
3688136 1188.1.1.1 ↗ alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.59 43.0 3.31e-01 77.2% 88.1%
3590119 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.58 40.0 4.06e-01 85.9% 73.3%
3496703 101.1.1.117 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 0.57 44.0 3.35e-01 81.5% 81.8%
3922718 5001.1.1.31 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GPR180-TMEM145_TM 0.57 48.0 3.55e-01 97.8% 34.8%
5057068 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.57 42.0 4.11e-01 78.3% 73.0%
3719896 3755.2.1.0 ↗ alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein 0.56 38.0 3.81e-01 77.2% 67.4%
3224304 4120.1.1.30 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › DUF842 0.56 46.0 4.79e-01 96.7% 98.8%
4682355 632.22.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.55 42.0 4.36e-01 93.5% 88.2%
5041920 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.55 40.0 4.08e-01 96.7% 78.9%
3701651 601.18.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.55 40.0 3.97e-01 82.6% 73.7%
3915018 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.54 46.0 3.54e-01 97.8% 49.6%
3594436 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.53 45.0 4.16e-01 94.6% 79.2%
3721398 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 39.0 3.99e-01 78.3% 80.0%
4983663 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.52 40.0 4.15e-01 96.7% 88.1%
3703542 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.52 38.0 3.31e-01 77.2% 54.3%
4023032 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 44.0 3.30e-01 97.8% 39.6%
3801982 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.51 35.0 3.48e-01 71.7% 94.7%
4013031 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 44.0 3.48e-01 94.6% 67.0%