←Back to structures

NC_020835.1__YP_007672680.1__PROG_00030__00027

Bact-Vir

NC_020835.1__YP_007672680.1__PROG_00030__00027

Identity

Accession:
NC_020835 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Tangaroavirus› Prochlorococcus_phage_P-SSP10

TaxID: 885867

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-94
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.68 47.0 4.11e-01 71.1% 95.9%
1u5tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 5.11e-01 77.1% 95.8%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 4.30e-01 71.1% 95.6%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.38e-01 71.1% 100.0%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.00e-01 72.3% 72.4%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.84e-01 84.3% 88.7%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.19e-01 71.1% 88.1%
3madA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 43.0 3.77e-01 75.9% 49.6%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.29e-01 77.1% 77.7%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.08e-01 72.3% 81.3%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.03e-01 71.1% 67.7%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.45e-01 71.1% 45.9%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.51e-01 73.5% 49.3%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.53e-01 73.5% 51.4%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 43.0 3.75e-01 77.1% 87.4%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.94e-01 77.1% 72.1%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.38e-01 81.9% 88.4%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.99e-01 71.1% 84.5%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 4.00e-01 74.7% 93.3%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.94e-01 77.1% 82.2%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.29e-01 71.1% 44.7%
4q6rA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 41.0 3.59e-01 81.9% 48.9%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.98e-01 75.9% 86.0%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.68e-01 75.9% 72.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.82e-01 78.3% 77.0%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.55 38.0 3.26e-01 72.3% 52.2%
2mc3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.68e-01 75.9% 84.5%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.92e-01 78.3% 84.4%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 32.0 2.63e-01 71.1% 30.6%
1eluA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 40.0 3.63e-01 81.9% 80.0%
3nx3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 39.0 3.35e-01 90.4% 46.8%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.93e-01 91.6% 70.9%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 44.0 3.03e-01 98.8% 82.9%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.51 37.0 3.18e-01 79.5% 85.7%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.51 42.0 3.70e-01 95.2% 60.9%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.50 36.0 3.42e-01 74.7% 81.2%
2uytA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 2.89e-01 85.5% 46.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315108 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.67 46.0 4.19e-01 71.1% 66.4%
3178207 101.1.2.774 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30201 0.65 45.0 3.52e-01 72.3% 48.6%
4310372 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.64 44.0 3.39e-01 71.1% 43.2%
4250998 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.64 45.0 4.29e-01 72.3% 85.3%
4364892 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.63 45.0 3.12e-01 74.7% 79.6%
4025070 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.63 46.0 4.09e-01 77.1% 76.7%
4232234 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.63 43.0 3.32e-01 71.1% 42.1%
3666925 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 46.0 4.02e-01 77.1% 76.0%
5069873 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 4.31e-01 71.1% 77.6%
3282605 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.62 45.0 4.65e-01 77.1% 90.0%
5045250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 4.93e-01 79.5% 95.7%
5069963 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.61 45.0 4.30e-01 78.3% 77.9%
4996058 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.61 42.0 3.77e-01 71.1% 64.3%
5057657 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 41.0 3.76e-01 71.1% 87.8%
3165321 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.60 44.0 4.36e-01 78.3% 87.8%
167429 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 42.0 3.45e-01 71.1% 45.9%
5002871 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 4.08e-01 75.9% 77.0%
5051754 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 4.25e-01 72.3% 88.7%
3930245 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.60 43.0 4.00e-01 77.1% 81.8%
5006536 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.60 42.0 4.15e-01 73.5% 77.8%
5024398 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 41.0 3.58e-01 72.3% 57.7%
3285369 109.4.1.2998 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25872 0.59 44.0 2.72e-01 77.1% 17.4%
4965712 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.59 43.0 4.14e-01 77.1% 76.8%
3261727 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.59 41.0 3.70e-01 72.3% 80.9%
4533897 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.58 43.0 3.53e-01 77.1% 54.0%
5044596 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.58 40.0 3.90e-01 72.3% 81.9%
143631 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.57 40.0 3.39e-01 73.5% 48.6%
4997011 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 2.97e-01 81.9% 26.2%
5038557 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.57 41.0 3.90e-01 77.1% 79.0%
3400082 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.57 41.0 3.90e-01 75.9% 76.0%
5034107 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.93e-01 72.3% 83.5%
5077975 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.82e-01 77.1% 86.7%
4962681 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 41.0 3.94e-01 78.3% 85.3%
4978858 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 41.0 3.85e-01 81.9% 83.6%
3721121 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.80e-01 77.1% 82.0%
4507561 3012.1.1.9 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › SecD_1st 0.55 46.0 3.87e-01 100.0% 51.6%
4344708 101.1.2.311 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA12 0.55 40.0 3.89e-01 78.3% 87.4%
3978019 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.55 40.0 4.16e-01 77.1% 89.3%
4321934 101.1.2.311 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA12 0.54 40.0 3.27e-01 78.3% 50.0%
4978354 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 40.0 3.78e-01 84.3% 80.0%
5053763 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.81e-01 77.1% 81.1%
1763896 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.53 41.0 3.87e-01 92.8% 68.9%
3743247 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.53 44.0 2.99e-01 96.4% 24.9%
3179915 101.1.2.124 ↗ alpha arrays › HTH › HTH › winged helix domain › Kin17_mid 0.52 40.0 3.58e-01 86.7% 69.2%
4327654 327.16.1.10 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 0.52 32.0 3.51e-01 71.1% 81.7%
3946500 306.1.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.51 36.0 3.70e-01 77.1% 86.3%
3712015 101.1.2.53 ↗ alpha arrays › HTH › HTH › winged helix domain › Mnd1 0.51 42.0 3.51e-01 95.2% 66.5%
4940198 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.29e-01 77.1% 53.3%