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NC_020835.1__YP_007672688.1__PROG_00038__00035
Bact-VirNC_020835.1__YP_007672688.1__PROG_00038__00035
Identity
- Accession:
- NC_020835 ↗
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Tangaroavirus›
Prochlorococcus_phage_P-SSP10
TaxID: 885867
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-77
Domain cluster:
rep: HQ317388.1__AGG91270.1__SWVG_00030__00028__D13-72
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8f5pE01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.83 | 51.0 | 3.02e-01 | 100.0% | 10.1% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.68 | 44.0 | 3.25e-01 | 100.0% | 28.4% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.66 | 42.0 | 3.95e-01 | 100.0% | 53.2% |
| 3cnwA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.64 | 44.0 | 3.38e-01 | 100.0% | 31.9% |
| 1f3zA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.61 | 55.0 | 4.16e-01 | 100.0% | 52.0% |
| 2gprA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.60 | 54.0 | 4.04e-01 | 100.0% | 50.6% |
| 4nsxA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 47.0 | 2.99e-01 | 88.9% | 95.1% |
| 4c5wA01 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.58 | 50.0 | 4.36e-01 | 98.4% | 95.9% |
| 4fnvA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.58 | 47.0 | 3.12e-01 | 92.1% | 56.4% |
| 2bolB02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 42.0 | 3.37e-01 | 82.5% | 39.1% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 47.0 | 4.09e-01 | 98.4% | 84.8% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.56 | 42.0 | 4.13e-01 | 95.2% | 75.7% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 35.0 | 3.64e-01 | 85.7% | 69.0% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 47.0 | 3.98e-01 | 98.4% | 73.9% |
| 5jmfA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 49.0 | 3.21e-01 | 100.0% | 28.0% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 47.0 | 4.13e-01 | 98.4% | 79.8% |
| 8hpoK01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 43.0 | 2.64e-01 | 87.3% | 87.4% |
| 1s28A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 50.0 | 3.87e-01 | 100.0% | 54.6% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 43.0 | 4.04e-01 | 100.0% | 72.0% |
| 1jrrA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 47.0 | 3.78e-01 | 100.0% | 66.4% |
| 4v1al00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.53 | 36.0 | 2.90e-01 | 71.4% | 62.4% |
| 8adlB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 42.0 | 2.76e-01 | 92.1% | 21.4% |
| 4r1kB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 47.0 | 3.59e-01 | 100.0% | 49.3% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4245376 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.85 | 73.0 | 7.47e-01 | 100.0% | 98.3% |
| 4501642 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.80 | 70.0 | 6.74e-01 | 100.0% | 85.7% |
| 4952218 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.80 | 67.0 | 6.81e-01 | 100.0% | 98.3% |
| 3200199 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.75 | 46.0 | 2.62e-01 | 100.0% | 5.7% |
| 4973393 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.74 | 65.0 | 6.20e-01 | 100.0% | 86.7% |
| None | — | 0.73 | 46.0 | 2.58e-01 | 100.0% | 5.6% | |
| 3985798 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.73 | 47.0 | 4.09e-01 | 100.0% | 44.2% |
| 4028948 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.71 | 48.0 | 2.85e-01 | 100.0% | 10.2% |
| 3461166 | 5.1.4.414 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lgl_C | 0.68 | 53.0 | 3.17e-01 | 100.0% | 12.8% |
| 3632850 | 5.1.4.119 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C | 0.67 | 51.0 | 3.10e-01 | 81.0% | 89.1% |
| 4933001 | 3933.1.1.0 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 | 0.66 | 54.0 | 5.14e-01 | 96.8% | 77.3% |
| 3998409 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.65 | 51.0 | 3.11e-01 | 85.7% | 93.8% |
| 3358274 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.64 | 48.0 | 3.89e-01 | 100.0% | 45.5% |
| 3597133 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 49.0 | 2.97e-01 | 82.5% | 82.5% |
| 3266580 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.63 | 46.0 | 3.07e-01 | 76.2% | 94.8% |
| 4032949 | 325.1.6.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PTS_EIIA_1 | 0.62 | 55.0 | 4.16e-01 | 100.0% | 52.0% |
| 3988937 | 325.1.6.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PTS_EIIA_1 | 0.62 | 55.0 | 4.13e-01 | 100.0% | 50.3% |
| 4479026 | 325.1.6.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PTS_EIIA_1 | 0.61 | 55.0 | 4.10e-01 | 100.0% | 50.3% |
| 4223354 | 325.1.6.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PTS_EIIA_1 | 0.60 | 54.0 | 3.89e-01 | 100.0% | 44.0% |
| 3614351 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.59 | 49.0 | 3.61e-01 | 100.0% | 33.3% |
| 4035992 | 12.3.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III | 0.58 | 51.0 | 3.45e-01 | 100.0% | 28.4% |
| 4952209 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 44.0 | 3.74e-01 | 88.9% | 71.1% |
| 3483569 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 47.0 | 2.86e-01 | 93.7% | 30.8% |
| 3595639 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.55 | 43.0 | 2.65e-01 | 90.5% | 16.0% |
| 3263717 | 213.1.1.35 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG | 0.54 | 35.0 | 3.41e-01 | 96.8% | 58.6% |
| 3486247 | 5.1.12.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains | 0.54 | 46.0 | 2.74e-01 | 100.0% | 13.2% |
| 3879256 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 47.0 | 2.91e-01 | 100.0% | 19.2% |
| 3913372 | 5.1.4.242 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N | 0.53 | 44.0 | 2.83e-01 | 95.2% | 20.9% |
| 3810516 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 47.0 | 3.31e-01 | 100.0% | 33.8% |
| 4170699 | 5.1.3.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 | 0.52 | 47.0 | 2.96e-01 | 100.0% | 21.2% |
| 3651616 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.52 | 44.0 | 3.80e-01 | 100.0% | 60.0% |
| 3660003 | 5.1.10.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 | 0.52 | 40.0 | 3.78e-01 | 88.9% | 80.0% |
| 3263883 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.51 | 39.0 | 2.45e-01 | 92.1% | 19.3% |