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NC_020837.1__YP_007672947.1__SXBG_00032__00032

Bact-Vir

NC_020837.1__YP_007672947.1__SXBG_00032__00032

Identity

Accession:
NC_020837 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Anaposvirus› Synechococcus_phage_S-CAM1

TaxID: 754037

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-34_55-71
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.64 55.0 4.22e-01 98.0% 52.5%
4ponA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 52.0 3.70e-01 98.0% 84.3%
2osoA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.62 49.0 3.52e-01 88.2% 48.4%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.61 50.0 4.91e-01 96.1% 87.7%
1mvfD00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.59 45.0 4.72e-01 84.3% 100.0%
5c6dA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 45.0 3.65e-01 88.2% 65.4%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 48.0 3.27e-01 98.0% 81.9%
1j5wB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 47.0 3.19e-01 98.0% 42.3%
1yfbA00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.55 44.0 4.40e-01 96.1% 92.3%
4melA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 46.0 3.85e-01 96.1% 89.4%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 3.28e-01 98.0% 45.8%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 47.0 3.28e-01 100.0% 70.8%
1nbwA02 3.90.470.30 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain 0.54 41.0 3.08e-01 88.2% 44.8%
2lueA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 43.0 3.39e-01 94.1% 73.9%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.53 43.0 3.49e-01 98.0% 76.1%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 44.0 3.33e-01 100.0% 82.9%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 41.0 2.93e-01 94.1% 97.3%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.52 41.0 3.54e-01 90.2% 95.3%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 2.84e-01 88.2% 86.0%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 38.0 3.08e-01 78.4% 87.2%
4f0aB02 3.30.2460.20 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain 0.51 38.0 3.56e-01 84.3% 88.2%
2bjoA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 36.0 2.96e-01 76.5% 87.2%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.50 38.0 2.72e-01 88.2% 24.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004854 3988.1.1.0 ↗ a/b three-layered sandwiches › Type III R-M system modification subunit C-terminal domain › Type III R-M system modification subunit C-terminal domain › Type III R-M system modification subunit C-terminal domain 0.63 49.0 3.91e-01 98.0% 40.0%
3787050 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 44.0 3.71e-01 84.3% 85.3%
5032176 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 47.0 4.56e-01 96.1% 86.7%
4017666 221.1.1.25 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › APG12 0.56 46.0 3.63e-01 94.1% 76.5%
5078891 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 44.0 4.39e-01 92.2% 100.0%
3455763 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 46.0 3.67e-01 96.1% 99.1%
3038102 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 46.0 4.52e-01 98.0% 100.0%
3258452 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 43.0 3.34e-01 88.2% 76.7%
3652417 2003.1.5.115 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.55 44.0 3.33e-01 98.0% 52.4%
3572980 6006.1.1.4 ↗ extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF28678 0.54 37.0 3.74e-01 88.2% 72.7%
5009974 2487.1.1.9 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase 0.53 43.0 3.49e-01 100.0% 90.4%
3636696 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.53 44.0 2.62e-01 96.1% 69.6%
3236944 864.1.1.5 ↗ a+b two layers › DLC › DLC › DLC › DUF684 0.53 44.0 3.86e-01 96.1% 83.7%
3747930 6006.1.1.4 ↗ extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF28678 0.53 36.0 3.25e-01 84.3% 47.5%
3969252 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.52 38.0 2.81e-01 78.4% 45.2%
3740450 328.1.1.3 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.52 41.0 3.44e-01 88.2% 91.1%
4972327 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.52 39.0 3.33e-01 86.3% 75.8%
3593996 228.1.1.0 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C 0.51 41.0 3.12e-01 98.0% 34.7%
4395753 3121.1.1.5 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_3 0.51 40.0 3.72e-01 94.1% 68.6%
4538622 2003.1.5.179 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.51 39.0 2.64e-01 86.3% 44.0%
5062402 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.50 38.0 2.84e-01 94.1% 29.7%