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NC_020837.1__YP_007672954.1__SXBG_00039__00039

Bact-Vir

NC_020837.1__YP_007672954.1__SXBG_00039__00039

Identity

Accession:
NC_020837 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Anaposvirus› Synechococcus_phage_S-CAM1

TaxID: 754037

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-64
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.76 65.0 4.48e-01 100.0% 46.7%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 54.0 4.31e-01 100.0% 86.0%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.66 46.0 2.77e-01 72.3% 92.0%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.66 54.0 4.24e-01 100.0% 42.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.66 55.0 4.57e-01 100.0% 55.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.66 55.0 4.55e-01 100.0% 54.3%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 52.0 3.69e-01 91.5% 29.9%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.65 55.0 4.69e-01 100.0% 68.3%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 52.0 4.65e-01 95.7% 100.0%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 52.0 4.28e-01 100.0% 94.8%
4oj8B00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.61 45.0 2.83e-01 78.7% 42.8%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 43.0 3.83e-01 100.0% 49.4%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 45.0 2.82e-01 80.9% 77.9%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.59 44.0 3.16e-01 80.9% 45.1%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 3.80e-01 100.0% 76.9%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.58 48.0 4.19e-01 100.0% 59.2%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 45.0 3.88e-01 93.6% 55.8%
7p0eA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.65e-01 100.0% 43.4%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 49.0 3.69e-01 100.0% 43.4%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 3.64e-01 100.0% 43.8%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.55e-01 100.0% 40.1%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.52e-01 100.0% 40.1%
1g6gB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 46.0 3.56e-01 100.0% 96.8%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.56 45.0 3.08e-01 93.6% 44.1%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 47.0 3.52e-01 100.0% 38.1%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.55 45.0 3.40e-01 100.0% 47.4%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.55 43.0 3.15e-01 89.4% 85.7%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 47.0 3.19e-01 100.0% 30.6%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.54 39.0 3.73e-01 97.9% 63.9%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 3.23e-01 100.0% 55.1%
2k13X00 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.54 42.0 3.41e-01 100.0% 42.7%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 40.0 2.98e-01 100.0% 27.7%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.43e-01 100.0% 45.7%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 36.0 3.54e-01 100.0% 63.2%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 45.0 3.42e-01 100.0% 44.4%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.03e-01 91.5% 57.0%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.52 38.0 3.38e-01 100.0% 51.3%
2p17A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 2.72e-01 100.0% 21.8%
3cw3A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.52 38.0 3.10e-01 100.0% 40.9%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.52 39.0 3.91e-01 100.0% 88.0%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.51 37.0 3.21e-01 80.9% 90.4%
3uv0B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 40.0 3.37e-01 97.9% 99.0%
3szpB02 3.40.190.290 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.51 42.0 2.87e-01 100.0% 50.3%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.06e-01 100.0% 99.3%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.00e-01 97.9% 70.5%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.81 73.0 6.32e-01 100.0% 97.1%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.79 71.0 6.15e-01 100.0% 98.6%
3475431 133.1.1.0 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.73 50.0 3.12e-01 72.3% 14.2%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.71 63.0 5.42e-01 100.0% 64.0%
3726962 304.9.1.94 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_YTH1 0.71 61.0 4.79e-01 100.0% 71.8%
5057619 2004.1.2.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.68 55.0 3.61e-01 100.0% 19.7%
1937230 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.66 52.0 3.67e-01 91.5% 29.4%
4633704 4007.1.1.1 ↗ a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.65 55.0 4.49e-01 100.0% 50.0%
4997210 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.65 52.0 4.16e-01 87.2% 81.1%
5009755 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.64 53.0 3.47e-01 100.0% 20.0%
3958896 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.63 50.0 4.77e-01 97.9% 75.0%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.63 49.0 4.02e-01 87.2% 81.1%
3307205 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.63 54.0 4.00e-01 100.0% 36.8%
4623707 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.62 48.0 3.82e-01 85.1% 76.8%
4397568 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.62 48.0 3.95e-01 87.2% 81.1%
3942510 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 47.0 3.79e-01 87.2% 76.8%
5029726 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.60 50.0 4.42e-01 100.0% 100.0%
5041711 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.60 49.0 4.43e-01 97.9% 98.6%
5001166 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 44.0 3.24e-01 100.0% 28.9%
4961379 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.59 47.0 3.16e-01 100.0% 20.5%
4139949 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.58 40.0 4.23e-01 100.0% 87.5%
3721040 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.58 45.0 2.98e-01 100.0% 18.4%
3231131 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 48.0 3.82e-01 100.0% 51.4%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.57 47.0 4.71e-01 100.0% 92.0%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.57 43.0 4.37e-01 100.0% 91.1%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.57 42.0 4.32e-01 100.0% 91.1%
4955569 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.57 43.0 3.04e-01 87.2% 72.0%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 45.0 4.46e-01 100.0% 88.0%
1844216 4007.1.1.1 ↗ a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.55 44.0 4.33e-01 97.9% 86.3%
3622513 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 44.0 4.18e-01 100.0% 93.3%
3618240 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 43.0 3.56e-01 100.0% 70.0%
3687651 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.53 42.0 2.80e-01 100.0% 18.4%
5000843 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 3.43e-01 95.7% 61.7%
3781073 223.2.1.29 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.52 39.0 2.83e-01 80.9% 55.7%
4189709 288.1.1.1 ↗ a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.52 40.0 2.77e-01 100.0% 21.3%
4983428 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.52 42.0 2.84e-01 91.5% 54.4%
3250477 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 43.0 3.22e-01 95.7% 53.8%