←Back to structures

NC_020837.1__YP_007673066.1__SXBG_00153__00151

Bact-Vir

NC_020837.1__YP_007673066.1__SXBG_00153__00151

Identity

Accession:
NC_020837 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Anaposvirus› Synechococcus_phage_S-CAM1

TaxID: 754037

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-111
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 35.0 5.08e-01 84.4% 98.0%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 45.0 4.43e-01 100.0% 56.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 45.0 5.39e-01 100.0% 95.8%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.68 33.0 4.47e-01 77.1% 91.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 39.0 4.69e-01 98.2% 88.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 38.0 4.79e-01 98.2% 96.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 36.0 4.46e-01 98.2% 89.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 38.0 4.50e-01 98.2% 88.0%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 33.0 4.50e-01 77.1% 98.3%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.62 50.0 5.22e-01 96.3% 94.9%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 37.0 4.34e-01 89.0% 86.7%
2c4xA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 4.24e-01 96.3% 80.9%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.58 43.0 4.36e-01 95.4% 78.3%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.58 28.0 3.06e-01 82.6% 52.2%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 26.0 3.54e-01 77.1% 95.8%
4c2dA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 41.0 4.44e-01 97.2% 94.6%
1aw7A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 43.0 4.13e-01 84.4% 77.2%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 44.0 4.34e-01 90.8% 82.6%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.53 35.0 3.60e-01 72.5% 68.8%
4udqA02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.53 37.0 3.18e-01 73.4% 72.2%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 44.0 4.26e-01 91.7% 82.3%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 43.0 4.25e-01 89.9% 86.7%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 4.19e-01 89.0% 90.5%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.96e-01 91.7% 91.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.78 40.0 5.48e-01 97.2% 100.0%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 40.0 4.97e-01 85.3% 80.0%
4883808 148.1.3.202 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › KOW5_SPT5 0.76 36.0 5.15e-01 84.4% 96.2%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.71 40.0 4.74e-01 99.1% 80.0%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 41.0 5.16e-01 98.2% 96.9%
4430538 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.67 38.0 4.43e-01 91.7% 80.0%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 38.0 4.69e-01 87.2% 93.8%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.66 38.0 4.42e-01 98.2% 77.5%
3591870 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 4.56e-01 78.0% 93.1%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 37.0 4.53e-01 80.7% 88.6%
5059796 4326.1.1.0 ↗ a+b two layers › ERH-like › ERH-like › ERH-like 0.64 38.0 4.63e-01 79.8% 92.8%
3918767 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 34.0 3.86e-01 79.8% 69.4%
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.56e-01 98.2% 84.4%
3942998 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.59 33.0 3.99e-01 83.5% 84.3%
4946199 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.59 28.0 3.31e-01 82.6% 64.0%
3473981 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.57 44.0 4.23e-01 100.0% 71.2%
4992013 304.4.1.80 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF790 0.56 44.0 4.08e-01 84.4% 95.0%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 32.0 3.72e-01 89.9% 80.0%
165634 221.1.1.17 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.52 44.0 4.44e-01 91.7% 91.9%
3947007 221.1.3.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain › Oxidored_molyb 0.52 40.0 3.72e-01 82.6% 97.8%
D2 medium residues 172-238_328-354
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.68 41.0 3.85e-01 86.2% 51.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3846390 2008.1.1.84 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector 0.56 52.0 3.93e-01 100.0% 49.8%
2792868 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.51 30.0 2.90e-01 73.4% 47.7%
3502069 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 44.0 3.80e-01 100.0% 61.3%
D3 medium residues 239-327_355-407
PDB
Domain cluster: rep: LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00275__D194-368
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 31.0 3.48e-01 83.8% 56.1%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 38.0 3.91e-01 100.0% 68.8%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 42.0 4.22e-01 100.0% 77.3%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 42.0 4.23e-01 100.0% 76.6%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.54 36.0 3.92e-01 77.5% 82.8%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 28.0 3.36e-01 93.0% 76.3%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.52 37.0 3.99e-01 78.2% 88.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953302 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.66 36.0 4.11e-01 100.0% 71.2%
3284176 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.64 38.0 4.09e-01 100.0% 68.3%
3697524 9.2.1.7 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.62 37.0 4.57e-01 83.1% 94.4%
5014277 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 32.0 4.00e-01 89.4% 82.4%
3979569 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 37.0 4.12e-01 79.6% 77.3%
5014253 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 29.0 4.03e-01 83.1% 92.9%
5074323 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.59 31.0 3.40e-01 100.0% 60.9%
3282063 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.57 38.0 4.03e-01 90.1% 76.8%
3627506 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 27.0 3.04e-01 92.3% 57.3%
3832419 319.1.1.13 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26144 0.52 26.0 2.97e-01 93.0% 63.0%
3821170 319.1.1.15 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 0.50 27.0 3.03e-01 85.9% 64.5%
3238997 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 38.0 3.95e-01 97.2% 85.0%