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NC_020842.1__YP_007673387.1__CGPG_00005__00005

Bact-Vir

NC_020842.1__YP_007673387.1__CGPG_00005__00005

Identity

Accession:
NC_020842 ↗
Kingdom:
phage

Quality

79.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-99
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3un0A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.67 48.0 3.74e-01 77.6% 94.5%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 48.0 4.17e-01 79.6% 75.0%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.62 49.0 3.34e-01 91.8% 33.7%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 53.0 3.99e-01 100.0% 87.6%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 44.0 3.29e-01 79.6% 44.9%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 50.0 4.14e-01 100.0% 76.2%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 43.0 3.57e-01 77.6% 48.9%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 46.0 4.21e-01 91.8% 78.1%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.60 50.0 3.90e-01 100.0% 93.2%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.60 43.0 3.37e-01 79.6% 34.5%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 50.0 3.57e-01 100.0% 46.0%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.19e-01 100.0% 77.2%
6q61A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.59 39.0 3.73e-01 77.6% 57.6%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.59 39.0 3.85e-01 77.6% 63.0%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 3.41e-01 91.8% 46.2%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 48.0 3.68e-01 100.0% 85.2%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 46.0 3.65e-01 100.0% 50.0%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.22e-01 83.7% 77.9%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.57 47.0 3.80e-01 100.0% 93.6%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 46.0 3.37e-01 100.0% 48.8%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 48.0 3.64e-01 100.0% 44.9%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.57 41.0 3.79e-01 79.6% 60.6%
2qjvA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 48.0 3.49e-01 100.0% 46.7%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.02e-01 95.9% 69.2%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 43.0 3.57e-01 87.8% 60.4%
3qh6A00 3.10.129.150 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Domain of unknown function (DUF5070) 0.56 45.0 3.46e-01 100.0% 38.6%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.56 43.0 3.40e-01 87.8% 56.8%
2ipiA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 47.0 3.10e-01 100.0% 43.7%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.55 46.0 4.26e-01 98.0% 96.9%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.83e-01 93.9% 80.7%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.55 42.0 3.35e-01 87.8% 57.3%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.44e-01 95.9% 75.9%
2q18X02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.54 42.0 2.96e-01 98.0% 80.7%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 42.0 3.44e-01 100.0% 95.8%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.12e-01 100.0% 85.8%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 43.0 3.57e-01 100.0% 96.0%
2ee2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.69e-01 98.0% 80.5%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 3.17e-01 100.0% 95.7%
4ll1C02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.01e-01 91.8% 92.1%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.62e-01 100.0% 81.7%
2ibgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.48e-01 100.0% 73.5%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 40.0 3.38e-01 100.0% 100.0%
1d0nA03 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 40.0 3.16e-01 93.9% 64.5%
2n1kA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.41e-01 100.0% 67.0%
4n2cA02 2.60.40.1700 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain 0.51 38.0 2.82e-01 93.9% 82.1%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.50e-01 100.0% 82.2%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.25e-01 100.0% 75.7%
4rdbA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 2.93e-01 95.9% 55.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3810292 3792.1.1.2 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.70 55.0 4.80e-01 87.8% 66.7%
3351981 3792.1.1.2 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.70 55.0 4.32e-01 87.8% 51.4%
4264671 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 58.0 5.08e-01 100.0% 80.0%
5033892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.19e-01 95.9% 96.9%
4674170 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.65 51.0 4.02e-01 93.9% 62.5%
4255584 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 54.0 4.41e-01 100.0% 86.0%
3166677 3792.1.1.0 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.64 48.0 4.09e-01 83.7% 57.6%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.62 52.0 4.52e-01 100.0% 90.0%
866419 10.32.1.59 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM65_1 0.62 52.0 3.97e-01 100.0% 62.5%
3744112 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 50.0 4.02e-01 100.0% 89.1%
4012802 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 52.0 4.07e-01 100.0% 86.4%
3388082 221.1.4.0 a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like 0.59 49.0 4.41e-01 100.0% 96.0%
3927539 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.10e-01 100.0% 61.1%
3276775 10.32.1.262 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Golvesin_C 0.58 47.0 3.60e-01 100.0% 95.6%
4353266 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.58 41.0 3.71e-01 79.6% 54.1%
4517008 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.58 45.0 4.07e-01 98.0% 86.3%
3171620 11.1.1.644 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.58 48.0 3.81e-01 98.0% 63.6%
3105960 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.57 46.0 3.53e-01 100.0% 55.0%
3255732 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 48.0 3.96e-01 100.0% 94.7%
1481665 382.1.1.7 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type 0.57 41.0 3.79e-01 79.6% 60.6%
4181458 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 46.0 3.73e-01 100.0% 87.3%
3615787 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.56 47.0 3.15e-01 100.0% 74.2%
3931783 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.56 45.0 3.82e-01 100.0% 95.8%
3613893 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 43.0 3.50e-01 87.8% 86.0%
3953219 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.33e-01 89.8% 73.6%
3280271 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 44.0 3.57e-01 98.0% 87.8%
3893654 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.55 44.0 3.56e-01 100.0% 80.9%
3523661 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 43.0 3.17e-01 91.8% 50.0%
3275234 11.1.4.127 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7035 0.55 42.0 3.43e-01 91.8% 70.9%
3937033 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.61e-01 100.0% 56.2%
5038245 1.1.7.4 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.55 44.0 3.55e-01 100.0% 96.5%
4136251 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 43.0 3.58e-01 98.0% 88.6%
3056322 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 45.0 3.63e-01 100.0% 92.7%
3959825 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 43.0 3.57e-01 100.0% 97.3%
3266950 11.1.1.801 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 0.54 41.0 3.06e-01 89.8% 65.2%
4537757 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 43.0 3.45e-01 100.0% 80.8%
3458124 10.12.1.17 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.54 45.0 2.77e-01 100.0% 19.1%
3792941 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 45.0 3.53e-01 100.0% 67.0%
1161758 10.4.1.2 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › C3_CUB2 0.53 42.0 3.35e-01 95.9% 76.3%
3972868 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 41.0 3.50e-01 100.0% 95.0%
3290973 1.1.7.15 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M18 0.52 42.0 3.36e-01 100.0% 96.7%
4936446 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.52 42.0 3.54e-01 100.0% 58.0%
4011994 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 41.0 3.38e-01 100.0% 94.5%
4944074 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.17e-01 87.8% 82.7%
1883531 11.15.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C 0.52 41.0 3.33e-01 95.9% 58.2%
3362139 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.52 42.0 2.74e-01 100.0% 23.9%
3525260 12.5.1.1 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.51 40.0 3.01e-01 100.0% 48.1%
3830260 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 39.0 2.33e-01 100.0% 20.2%
3601924 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.51 36.0 2.66e-01 83.7% 86.3%
3250505 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.50 39.0 2.87e-01 89.8% 91.7%