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NC_020842.1__YP_007673387.1__CGPG_00005__00005
Bact-VirNC_020842.1__YP_007673387.1__CGPG_00005__00005
Identity
- Accession:
- NC_020842 ↗
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Taxonomy
TaxID: 756282
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 51-99
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3un0A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.67 | 48.0 | 3.74e-01 | 77.6% | 94.5% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 48.0 | 4.17e-01 | 79.6% | 75.0% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.62 | 49.0 | 3.34e-01 | 91.8% | 33.7% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 53.0 | 3.99e-01 | 100.0% | 87.6% |
| 3h96C00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 44.0 | 3.29e-01 | 79.6% | 44.9% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 50.0 | 4.14e-01 | 100.0% | 76.2% |
| 3k6yA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 43.0 | 3.57e-01 | 77.6% | 48.9% |
| 4r8tB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 46.0 | 4.21e-01 | 91.8% | 78.1% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.60 | 50.0 | 3.90e-01 | 100.0% | 93.2% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.60 | 43.0 | 3.37e-01 | 79.6% | 34.5% |
| 3npfA03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.59 | 50.0 | 3.57e-01 | 100.0% | 46.0% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 51.0 | 4.19e-01 | 100.0% | 77.2% |
| 6q61A00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.59 | 39.0 | 3.73e-01 | 77.6% | 57.6% |
| 4bd9B01 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.59 | 39.0 | 3.85e-01 | 77.6% | 63.0% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 46.0 | 3.41e-01 | 91.8% | 46.2% |
| 1c77B00 | 3.10.20.130 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 48.0 | 3.68e-01 | 100.0% | 85.2% |
| 1va0B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.58 | 46.0 | 3.65e-01 | 100.0% | 50.0% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 42.0 | 3.22e-01 | 83.7% | 77.9% |
| 4fcaA01 | 2.60.120.1250 | Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 | 0.57 | 47.0 | 3.80e-01 | 100.0% | 93.6% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 46.0 | 3.37e-01 | 100.0% | 48.8% |
| 3ffjA04 | 2.60.40.4040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 48.0 | 3.64e-01 | 100.0% | 44.9% |
| 2mj0A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.57 | 41.0 | 3.79e-01 | 79.6% | 60.6% |
| 2qjvA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 48.0 | 3.49e-01 | 100.0% | 46.7% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 4.02e-01 | 95.9% | 69.2% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 43.0 | 3.57e-01 | 87.8% | 60.4% |
| 3qh6A00 | 3.10.129.150 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Domain of unknown function (DUF5070) | 0.56 | 45.0 | 3.46e-01 | 100.0% | 38.6% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.56 | 43.0 | 3.40e-01 | 87.8% | 56.8% |
| 2ipiA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.55 | 47.0 | 3.10e-01 | 100.0% | 43.7% |
| 1yleA02 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.55 | 46.0 | 4.26e-01 | 98.0% | 96.9% |
| 5utkA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 3.83e-01 | 93.9% | 80.7% |
| 4hscX04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.55 | 42.0 | 3.35e-01 | 87.8% | 57.3% |
| 2b39A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 43.0 | 3.44e-01 | 95.9% | 75.9% |
| 2q18X02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.54 | 42.0 | 2.96e-01 | 98.0% | 80.7% |
| 4g1vA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 42.0 | 3.44e-01 | 100.0% | 95.8% |
| 3ecqA01 | 2.60.120.870 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 43.0 | 3.12e-01 | 100.0% | 85.8% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 43.0 | 3.57e-01 | 100.0% | 96.0% |
| 2ee2A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.69e-01 | 98.0% | 80.5% |
| 2cdoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 40.0 | 3.17e-01 | 100.0% | 95.7% |
| 4ll1C02 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 38.0 | 3.01e-01 | 91.8% | 92.1% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.62e-01 | 100.0% | 81.7% |
| 2ibgA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.48e-01 | 100.0% | 73.5% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 40.0 | 3.38e-01 | 100.0% | 100.0% |
| 1d0nA03 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 40.0 | 3.16e-01 | 93.9% | 64.5% |
| 2n1kA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.41e-01 | 100.0% | 67.0% |
| 4n2cA02 | 2.60.40.1700 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain | 0.51 | 38.0 | 2.82e-01 | 93.9% | 82.1% |
| 1tdqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.50e-01 | 100.0% | 82.2% |
| 1yq2A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.25e-01 | 100.0% | 75.7% |
| 4rdbA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 38.0 | 2.93e-01 | 95.9% | 55.0% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3810292 | 3792.1.1.2 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd | 0.70 | 55.0 | 4.80e-01 | 87.8% | 66.7% |
| 3351981 | 3792.1.1.2 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd | 0.70 | 55.0 | 4.32e-01 | 87.8% | 51.4% |
| 4264671 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.69 | 58.0 | 5.08e-01 | 100.0% | 80.0% |
| 5033892 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 56.0 | 5.19e-01 | 95.9% | 96.9% |
| 4674170 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.65 | 51.0 | 4.02e-01 | 93.9% | 62.5% |
| 4255584 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.64 | 54.0 | 4.41e-01 | 100.0% | 86.0% |
| 3166677 | 3792.1.1.0 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain | 0.64 | 48.0 | 4.09e-01 | 83.7% | 57.6% |
| 3774692 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.62 | 52.0 | 4.52e-01 | 100.0% | 90.0% |
| 866419 | 10.32.1.59 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM65_1 | 0.62 | 52.0 | 3.97e-01 | 100.0% | 62.5% |
| 3744112 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.60 | 50.0 | 4.02e-01 | 100.0% | 89.1% |
| 4012802 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 52.0 | 4.07e-01 | 100.0% | 86.4% |
| 3388082 | 221.1.4.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like | 0.59 | 49.0 | 4.41e-01 | 100.0% | 96.0% |
| 3927539 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 49.0 | 4.10e-01 | 100.0% | 61.1% |
| 3276775 | 10.32.1.262 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Golvesin_C | 0.58 | 47.0 | 3.60e-01 | 100.0% | 95.6% |
| 4353266 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.58 | 41.0 | 3.71e-01 | 79.6% | 54.1% |
| 4517008 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.58 | 45.0 | 4.07e-01 | 98.0% | 86.3% |
| 3171620 | 11.1.1.644 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 | 0.58 | 48.0 | 3.81e-01 | 98.0% | 63.6% |
| 3105960 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.57 | 46.0 | 3.53e-01 | 100.0% | 55.0% |
| 3255732 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 48.0 | 3.96e-01 | 100.0% | 94.7% |
| 1481665 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.57 | 41.0 | 3.79e-01 | 79.6% | 60.6% |
| 4181458 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.56 | 46.0 | 3.73e-01 | 100.0% | 87.3% |
| 3615787 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.56 | 47.0 | 3.15e-01 | 100.0% | 74.2% |
| 3931783 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.56 | 45.0 | 3.82e-01 | 100.0% | 95.8% |
| 3613893 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 43.0 | 3.50e-01 | 87.8% | 86.0% |
| 3953219 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 43.0 | 3.33e-01 | 89.8% | 73.6% |
| 3280271 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.56 | 44.0 | 3.57e-01 | 98.0% | 87.8% |
| 3893654 | 1.1.7.69 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel | 0.55 | 44.0 | 3.56e-01 | 100.0% | 80.9% |
| 3523661 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 43.0 | 3.17e-01 | 91.8% | 50.0% |
| 3275234 | 11.1.4.127 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7035 | 0.55 | 42.0 | 3.43e-01 | 91.8% | 70.9% |
| 3937033 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 43.0 | 3.61e-01 | 100.0% | 56.2% |
| 5038245 | 1.1.7.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 | 0.55 | 44.0 | 3.55e-01 | 100.0% | 96.5% |
| 4136251 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.55 | 43.0 | 3.58e-01 | 98.0% | 88.6% |
| 3056322 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.55 | 45.0 | 3.63e-01 | 100.0% | 92.7% |
| 3959825 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 43.0 | 3.57e-01 | 100.0% | 97.3% |
| 3266950 | 11.1.1.801 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 | 0.54 | 41.0 | 3.06e-01 | 89.8% | 65.2% |
| 4537757 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 43.0 | 3.45e-01 | 100.0% | 80.8% |
| 3458124 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.54 | 45.0 | 2.77e-01 | 100.0% | 19.1% |
| 3792941 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 45.0 | 3.53e-01 | 100.0% | 67.0% |
| 1161758 | 10.4.1.2 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › C3_CUB2 | 0.53 | 42.0 | 3.35e-01 | 95.9% | 76.3% |
| 3972868 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.53 | 41.0 | 3.50e-01 | 100.0% | 95.0% |
| 3290973 | 1.1.7.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M18 | 0.52 | 42.0 | 3.36e-01 | 100.0% | 96.7% |
| 4936446 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.52 | 42.0 | 3.54e-01 | 100.0% | 58.0% |
| 4011994 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 41.0 | 3.38e-01 | 100.0% | 94.5% |
| 4944074 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.17e-01 | 87.8% | 82.7% |
| 1883531 | 11.15.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C | 0.52 | 41.0 | 3.33e-01 | 95.9% | 58.2% |
| 3362139 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.52 | 42.0 | 2.74e-01 | 100.0% | 23.9% |
| 3525260 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.51 | 40.0 | 3.01e-01 | 100.0% | 48.1% |
| 3830260 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 39.0 | 2.33e-01 | 100.0% | 20.2% |
| 3601924 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.51 | 36.0 | 2.66e-01 | 83.7% | 86.3% |
| 3250505 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.50 | 39.0 | 2.87e-01 | 89.8% | 91.7% |