←Back to structures

NC_020842.1__YP_007673461.1__CGPG_00080__00079

Bact-Vir

NC_020842.1__YP_007673461.1__CGPG_00080__00079

Identity

Accession:
NC_020842 ↗
Kingdom:
phage

Quality

60.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cbastvirus› Cellulophaga_phage_phiST

TaxID: 756282

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-134_282-310
PDB
D2 high residues 140-277_315-323
PDB
Domain cluster: rep: OK632026.1__UFK27510.1__X__00028__D137-262_297-308
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e0zC03 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.79 51.0 6.23e-01 98.0% 100.0%
3dktA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.74 48.0 5.80e-01 99.3% 100.0%
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.74 46.0 5.74e-01 78.9% 100.0%
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.70 48.0 5.61e-01 97.3% 97.1%
3bqwA02 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.65 51.0 5.32e-01 83.0% 98.5%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.64 49.0 5.37e-01 81.0% 95.9%
1dbfA00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.58 41.0 4.42e-01 81.0% 83.5%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 35.0 3.31e-01 91.8% 47.3%
2dm9A00 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.56 37.0 4.04e-01 95.2% 81.4%
1szqA02 3.30.1330.120 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-methylcitrate dehydratase PrpD 0.56 40.0 4.15e-01 74.1% 97.9%
3k12D00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.55 38.0 4.18e-01 83.0% 87.5%
1ofuA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.55 35.0 4.15e-01 70.1% 98.9%
4bvqA02 3.30.1330.180 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU B 0.52 37.0 3.77e-01 73.5% 94.6%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.52 28.0 3.60e-01 76.2% 100.0%
2f5tX01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.51 33.0 3.43e-01 91.8% 68.3%
1uqtA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 42.0 3.59e-01 88.4% 92.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975504 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.75 37.0 4.73e-01 70.7% 81.2%
4306281 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.72 38.0 4.69e-01 70.1% 80.0%
5042513 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.69 36.0 3.92e-01 70.7% 60.0%
4201753 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.69 41.0 4.35e-01 76.9% 66.2%
4954548 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.68 65.0 5.13e-01 100.0% 57.8%
4313471 2485.3.1.11 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.68 57.0 4.45e-01 89.1% 80.0%
2841997 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.66 62.0 4.55e-01 100.0% 63.4%
5083777 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.64 57.0 4.44e-01 93.9% 80.0%
3838428 298.4.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.64 38.0 4.14e-01 76.9% 70.0%
3965498 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.64 60.0 4.54e-01 100.0% 61.4%
3090875 2485.3.1.14 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.64 59.0 4.60e-01 100.0% 63.3%
3977525 2485.3.1.4 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 0.61 57.0 4.31e-01 100.0% 58.0%
4412841 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.60 38.0 3.98e-01 76.9% 68.1%
4995674 2485.3.1.5 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.60 56.0 4.55e-01 100.0% 65.5%
4889260 2485.3.1.12 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.59 50.0 4.09e-01 93.9% 50.2%
2841509 2485.3.1.12 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.59 55.0 4.30e-01 100.0% 58.2%
4960220 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.59 36.0 3.98e-01 77.6% 75.7%
2988313 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.59 55.0 4.42e-01 100.0% 90.1%
2989340 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.57 53.0 4.08e-01 100.0% 60.6%
2639625 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.55 50.0 4.06e-01 100.0% 88.2%
4079005 298.4.1.6 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › T3SS_SCTL 0.55 37.0 3.98e-01 96.6% 80.0%
5055723 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.55 37.0 3.99e-01 81.6% 83.3%
2831773 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.54 49.0 4.02e-01 100.0% 54.5%
4415704 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.54 35.0 3.50e-01 70.1% 63.3%
3377563 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.54 41.0 4.07e-01 81.6% 92.5%
5027137 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.52 47.0 3.50e-01 99.3% 46.2%
3626526 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.51 37.0 4.08e-01 74.8% 100.0%
4992548 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.50 33.0 3.49e-01 93.2% 73.8%