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NC_020843.1__YP_007673495.1__VPHG_00009__00009
Bact-VirNC_020843.1__YP_007673495.1__VPHG_00009__00009
Identity
- Accession:
- NC_020843 ↗
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-67
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.70 | 54.0 | 5.18e-01 | 100.0% | 72.4% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.69 | 53.0 | 5.08e-01 | 100.0% | 72.4% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 51.0 | 5.04e-01 | 100.0% | 77.6% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.65 | 48.0 | 4.97e-01 | 100.0% | 85.0% |
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.65 | 43.0 | 4.88e-01 | 96.9% | 93.3% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 53.0 | 5.15e-01 | 100.0% | 85.9% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.63 | 54.0 | 4.46e-01 | 100.0% | 53.7% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.63 | 51.0 | 3.79e-01 | 100.0% | 34.3% |
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 53.0 | 4.31e-01 | 100.0% | 100.0% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 53.0 | 4.53e-01 | 100.0% | 100.0% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 51.0 | 4.50e-01 | 100.0% | 78.8% |
| 8dqaA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.59 | 48.0 | 4.22e-01 | 90.6% | 100.0% |
| 3bexA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 44.0 | 3.57e-01 | 100.0% | 39.7% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.58 | 50.0 | 4.73e-01 | 96.9% | 100.0% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.58 | 48.0 | 4.09e-01 | 92.2% | 93.4% |
| 3qcpA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 46.0 | 3.42e-01 | 89.1% | 36.8% |
| 1hq6B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.58 | 50.0 | 3.45e-01 | 100.0% | 31.1% |
| 1wx9A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 51.0 | 4.64e-01 | 100.0% | 73.3% |
| 6p3xB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 48.0 | 3.57e-01 | 100.0% | 35.0% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.57 | 40.0 | 3.33e-01 | 75.0% | 40.5% |
| 1lfwA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 49.0 | 4.22e-01 | 100.0% | 99.1% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 50.0 | 4.33e-01 | 100.0% | 82.2% |
| 1x31B02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.56 | 47.0 | 3.72e-01 | 100.0% | 54.5% |
| 4g3wA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 40.0 | 3.13e-01 | 75.0% | 86.1% |
| 1e3hA03 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.55 | 43.0 | 3.05e-01 | 85.9% | 57.7% |
| 1tvgA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 48.0 | 3.80e-01 | 100.0% | 55.9% |
| 1t8rA01 | 3.30.1730.10 | Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain | 0.55 | 47.0 | 3.60e-01 | 100.0% | 41.1% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.55 | 46.0 | 3.91e-01 | 93.8% | 82.9% |
| 2mlbA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 47.0 | 4.46e-01 | 100.0% | 82.3% |
| 2mqjA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 47.0 | 4.45e-01 | 100.0% | 87.0% |
| 3bb6C00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 47.0 | 3.89e-01 | 100.0% | 55.4% |
| 2ofhX00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 4.34e-01 | 95.3% | 97.2% |
| 2qa1A02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 46.0 | 4.34e-01 | 100.0% | 98.7% |
| 3hbxA03 | 3.90.1150.160 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 36.0 | 3.33e-01 | 78.1% | 83.0% |
| 3n77A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 42.0 | 3.37e-01 | 98.4% | 63.8% |
| 8b38A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 42.0 | 3.02e-01 | 100.0% | 61.5% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 34.0 | 2.66e-01 | 71.9% | 66.0% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.50 | 40.0 | 3.61e-01 | 90.6% | 97.9% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3994665 | 3333.1.1.1 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_B | 0.74 | 65.0 | 5.01e-01 | 100.0% | 53.1% |
| 3247406 | 3333.1.1.1 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_B | 0.74 | 64.0 | 4.79e-01 | 100.0% | 46.7% |
| 3593508 | 3333.1.1.0 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 | 0.72 | 64.0 | 4.90e-01 | 100.0% | 46.2% |
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.72 | 55.0 | 5.04e-01 | 100.0% | 63.5% |
| 3263434 | 3333.1.1.0 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 | 0.69 | 61.0 | 4.32e-01 | 100.0% | 36.4% |
| 3519907 | 3333.1.1.1 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_B | 0.68 | 61.0 | 4.49e-01 | 100.0% | 43.6% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.68 | 54.0 | 5.59e-01 | 98.4% | 98.3% |
| 223776 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.68 | 51.0 | 4.95e-01 | 100.0% | 73.2% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.66 | 52.0 | 5.25e-01 | 100.0% | 86.2% |
| 3551719 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 54.0 | 5.15e-01 | 100.0% | 81.3% |
| 3987406 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.64 | 53.0 | 5.08e-01 | 100.0% | 78.7% |
| 3409700 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.64 | 49.0 | 4.10e-01 | 100.0% | 47.0% |
| 4084879 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 54.0 | 4.97e-01 | 100.0% | 72.9% |
| 3941732 | 3115.6.1.0 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon | 0.64 | 44.0 | 4.84e-01 | 100.0% | 94.0% |
| 4541963 | 327.6.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane | 0.64 | 55.0 | 4.43e-01 | 96.9% | 83.2% |
| 3508212 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.64 | 51.0 | 4.98e-01 | 100.0% | 80.0% |
| 4928213 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 54.0 | 5.31e-01 | 100.0% | 94.3% |
| 3616199 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.62 | 53.0 | 3.59e-01 | 100.0% | 50.8% |
| 3593924 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.62 | 54.0 | 4.45e-01 | 100.0% | 53.3% |
| 3956448 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.61 | 53.0 | 5.01e-01 | 100.0% | 97.5% |
| 4098000 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.61 | 52.0 | 4.28e-01 | 98.4% | 76.7% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 46.0 | 4.68e-01 | 100.0% | 86.2% |
| 5049254 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 38.0 | 2.96e-01 | 76.6% | 27.6% |
| 5049138 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 42.0 | 3.34e-01 | 75.0% | 35.6% |
| 3422969 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.60 | 51.0 | 4.26e-01 | 100.0% | 95.0% |
| 5079725 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 39.0 | 4.03e-01 | 82.8% | 71.7% |
| 1002449 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.59 | 42.0 | 3.43e-01 | 75.0% | 39.3% |
| 2886668 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.59 | 42.0 | 4.54e-01 | 100.0% | 98.0% |
| 3333290 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.59 | 52.0 | 3.79e-01 | 100.0% | 66.1% |
| 4609775 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.58 | 38.0 | 3.42e-01 | 75.0% | 45.3% |
| 4867394 | 3820.1.1.1 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI | 0.58 | 47.0 | 4.11e-01 | 100.0% | 59.6% |
| 2336722 | 221.1.1.47 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_3 | 0.58 | 47.0 | 4.04e-01 | 92.2% | 93.3% |
| 4664962 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 48.0 | 4.32e-01 | 100.0% | 100.0% |
| 3982100 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.56 | 48.0 | 3.74e-01 | 100.0% | 43.3% |
| 3484366 | 284.1.2.1 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C | 0.55 | 46.0 | 4.12e-01 | 100.0% | 96.0% |
| 3280482 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.55 | 47.0 | 3.91e-01 | 100.0% | 74.2% |
| 4940890 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.55 | 39.0 | 3.28e-01 | 79.7% | 68.0% |
| 3249243 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 45.0 | 3.84e-01 | 100.0% | 86.4% |
| 5028640 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.53 | 39.0 | 3.32e-01 | 79.7% | 72.2% |
| 3782638 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.53 | 45.0 | 3.33e-01 | 100.0% | 69.7% |
| 3291916 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.53 | 45.0 | 2.92e-01 | 98.4% | 19.7% |
| 3472190 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.53 | 45.0 | 2.97e-01 | 100.0% | 24.3% |
| 3282710 | 2492.1.1.35 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 | 0.52 | 44.0 | 3.33e-01 | 95.3% | 57.0% |
| 3987859 | 101.1.2.584 ↗ | alpha arrays › HTH › HTH › winged helix domain › HrcA | 0.52 | 42.0 | 3.68e-01 | 96.9% | 85.5% |
| 3683470 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.51 | 43.0 | 3.01e-01 | 96.9% | 33.5% |