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NC_020843.1__YP_007673521.1__VPHG_00035__00035

Bact-Vir

NC_020843.1__YP_007673521.1__VPHG_00035__00035

Identity

Accession:
NC_020843 ↗
Kingdom:
phage

Quality

64.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_11895-B1

TaxID: 754075

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-104
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sxjD03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.67 49.0 4.24e-01 78.9% 97.8%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.63 43.0 3.89e-01 73.7% 70.1%
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 53.0 3.58e-01 100.0% 37.7%
4ewcA03 1.20.120.1660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 52.0 4.90e-01 100.0% 92.0%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.62 41.0 3.25e-01 98.2% 32.8%
1eteA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.62 53.0 4.06e-01 96.5% 77.6%
6tblB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 43.0 3.57e-01 75.4% 92.8%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.61 41.0 3.81e-01 73.7% 75.6%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.61 45.0 3.61e-01 80.7% 81.0%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 46.0 3.71e-01 84.2% 72.2%
6vvoE02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.59 48.0 4.17e-01 100.0% 82.8%
3pyoY00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 47.0 4.62e-01 100.0% 80.6%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.57 42.0 3.41e-01 78.9% 74.5%
2pmvA01 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 48.0 3.17e-01 100.0% 34.1%
2b9wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 39.0 2.75e-01 77.2% 23.3%
2a1iA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 46.0 3.68e-01 93.0% 100.0%
6l1gB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 44.0 2.96e-01 100.0% 63.1%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.55 37.0 2.80e-01 70.2% 32.9%
2k8oA00 1.20.5.2120 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 35.0 3.46e-01 98.2% 60.0%
5n17A01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 49.0 3.89e-01 98.2% 52.9%
3u61D03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.54 44.0 3.90e-01 96.5% 76.9%
2mhkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 38.0 3.08e-01 77.2% 37.6%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.53 46.0 4.49e-01 100.0% 85.5%
4iv6B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 40.0 3.27e-01 84.2% 65.5%
2c5uA02 1.10.3550.20 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › 0.52 42.0 3.29e-01 93.0% 56.5%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.51 34.0 3.20e-01 98.2% 53.9%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.50 34.0 3.30e-01 96.5% 63.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3306696 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.66 47.0 3.26e-01 77.2% 25.9%
3569684 108.1.1.95 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › CCD48 0.65 44.0 3.74e-01 70.2% 67.4%
3343408 109.4.1.1411 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30303 0.64 45.0 3.63e-01 77.2% 52.5%
3377010 109.4.1.1411 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30303 0.63 45.0 3.04e-01 77.2% 26.8%
3807338 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 43.0 3.36e-01 73.7% 83.6%
5029513 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.62 47.0 4.33e-01 98.2% 64.3%
3707503 101.1.10.20 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_2 0.62 42.0 3.30e-01 70.2% 70.4%
3734058 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.61 43.0 3.63e-01 77.2% 78.1%
3297740 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.60 52.0 3.27e-01 100.0% 37.8%
3597989 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.60 45.0 3.92e-01 100.0% 54.1%
3581266 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.59 43.0 3.48e-01 77.2% 77.3%
3583780 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 42.0 3.28e-01 77.2% 38.5%
3520040 604.5.1.3 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_1_C 0.58 47.0 3.41e-01 91.2% 98.2%
4104241 148.1.3.327 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CCD48 0.56 38.0 3.32e-01 70.2% 64.2%
1758636 138.1.1.8 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Gp44_C 0.56 41.0 3.65e-01 82.5% 93.3%
3966460 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 46.0 3.08e-01 100.0% 42.7%
3239689 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.54 38.0 3.21e-01 77.2% 67.6%
3507458 109.24.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 0.53 46.0 4.00e-01 98.2% 91.1%
3177239 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.53 41.0 3.24e-01 89.5% 62.2%
4945107 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 41.0 2.85e-01 98.2% 46.2%
3258502 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.51 42.0 3.01e-01 100.0% 75.1%
3258505 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 41.0 3.18e-01 100.0% 60.6%
4296281 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.50 40.0 2.75e-01 100.0% 49.6%
4088578 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.50 38.0 3.71e-01 84.2% 100.0%